Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02087 ATGGTTTTTTCTTCTATTCAAGGTTATGTAGATCCACCTAATTGGCATCACCAGcaaccaaatcatcaacaacaaaatggAAGTGATAACATTCAACTGCTTCCACCTTTACCACCTCAAGTGGGAGGTAGtactggtggtggtggtggtggtggtactATGGGCTCGATCAGACCAAACTCTATGGCTGATCGAGCTCGTTTAGCAAAATTACCACCACCAGAACCAGCACTGAAGTGTCCACGATGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTGACTCAACCTCGTCACTTCTGCAAAGCTTGTAGACGTTATTGGACAAGAGGAGGTGCACTTAGAAATGTTCCGGTTGGTGGAGGTTGTCGTAGAAACAACAAGAAGAACAAAAGAAGCCGTTCGAAATCTCCTAATTCAACAAACTCCCATGAAAAACAAACTTCCTCGTCAAGTGCAATTCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTACTAACCTACCCTTCATGGCCTCGATGCAGAATCATCTGAGTCGTTATGTTGTTGGTAACGTTAACATGGGTCTCGGTTTACGCGAGAtccaagaacaacaacaacaacaagatcaTATGGGGTTTCAAATTGGTGTTGGTAATGGTAACTCGTCTGTTTCTGCTGCTGGTGCCGGAGGAGGTGTTGGAGTTGATCAGTGGCGTAATTTACAACAATTTCCTTTCTTGAATACTTTTGAATCGAATTCTAGTGGAAACAATTCATATCCTTTTCAAGGAGAAAGCATTGAAGCAGCATCATCTGGATTTGTAGGAGATATAGCTTCAAATCCTAGGGTTGTTAATCAAGAACAACCACCACTTAAAATGGAGGAAAATAGAAGTTTAAATTTGTCAAGAACTTCTCTTAATGTCTCTGAACATAATAACCAGCAGCAATTTTATTCATGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA 1008 0.37 MVFSSIQGYVDPPNWHHQQPNHQQQNGSDNIQLLPPLPPQVGGSTGGGGGGGTMGSIRPNSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSHEKQTSSSSAIPSHHELIGHQLPQTITNLPFMASMQNHLSRYVVGNVNMGLGLREIQEQQQQQDHMGFQIGVGNGNSSVSAAGAGGGVGVDQWRNLQQFPFLNTFESNSSGNNSYPFQGESIEAASSGFVGDIASNPRVVNQEQPPLKMEENRSLNLSRTSLNVSEHNNQQQFYSWNDLSGSSTTHLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02087 335 MobiDBLite consensus disorder prediction 123 159 - -
Tsu02g02087 335 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Tsu02g02087 335 MobiDBLite consensus disorder prediction 10 59 - -
Tsu02g02087 335 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Tsu02g02087 335 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Tsu02g02087 335 MobiDBLite consensus disorder prediction 140 159 - -
Tsu02g02087 335 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 331 - -
Tsu02g02087 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 331 IPR045174 GO:0003700|GO:0006355
Tsu02g02087 335 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02087 Tsu-Chr2 20363085 20364534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02087 32 272 C2C2-Dof Transcription Factor Family AT3G55370 43.028 1.88e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g02087 zf-Dof 7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02087 - - gmx:100801154 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02087 02 20363085 20364534 Tsu02g02087 02 20363085 20364534 ECH
Tsu02g05184 02 60833570 60835253 Tsu02g02087 02 20363085 20364534 PCT