Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01945 ATGTTTGGTAACTGTGTTCATGAGAAAACGGTAATCACTTCCAACAAATTGACACAGAGTATTGAGATAGATGATCATCATAATAATAAGGTTTCAATTTCAATGGCTTCTTCAAGTGGTGGTACTAATagggttatggaaaaaccaggacaagaacttcttcaacaacaacaacaagctTTAAGATGTCCACGTTGTGATTCATCAAACACAAAATTCTGTTACTATAATAACTATAGTTTATCACAACCAAGACACTTTTGCAAAGCTTGTAAAAGATATTGGACAAGAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAGAGACCAAATCATTCTTCTTCCAATAACAATAACATtgattctccttcttcttcaaATCCTACTAGTGTTACTGCTAATTCAAACCCTTcttctcaacaacaacaacaacaacaacatcatagtTTTGATGTTGCTTCTACTTCAAACCATATTAATTCTCTGCTTTATGGTAACTCTTGTCATGATGTTATGAATTTTCCTTTTGCAACAAGGTTTAATTCTACTCGAGTTTCAAGTTCTGGTTatgatcatcatcttcaacaaaATGGTCTTGGATTAGGCTTTTCATCTGGTTTAGCTAATCTTAATAATCATCATGGTGATTATAGAAATGGGTTTAGTACTACTACTTCAAATAATGACAATTATAGTTCCATCTTTGGTTCTTCTATGGGTTCTAGTTCTACTACTCCAGTTATGAGTTCTCTACTTAGCTCTACACTACTTCAACAGAAATTCATGACTACTGTTGGTGGTGGCGGCGACGGCAACGGCGGCGGCAACGGTAACGGAAACAGCGGCGGCAACGGCGGAATGAAAGGTGATATTTTTCATCATCAAGATATGAAAATGGAAGGAAATAGTAGAAGTGAAGTTGAAATGATGGCTTCAAAAGAAGGACTAAATAGGTTGGATCAGTGGAACAATACTCACATGAATGGTAATGGTGCTACTTTTCAAAACCAGATGGAGAATATGGGTTTATCTGATTCAGGTTATTGGAATAAtagtaacaacaacaacaacatagcAACAACAGGTTTGAGTAGTGTTTGGAGTACTGATCAACCTAATAATATTGGTTCTAATTCAGTTACTTCTCTGATCTAG 1182 0.313 MFGNCVHEKTVITSNKLTQSIEIDDHHNNKVSISMASSSGGTNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNNNNIDSPSSSNPTSVTANSNPSSQQQQQQQHHSFDVASTSNHINSLLYGNSCHDVMNFPFATRFNSTRVSSSGYDHHLQQNGLGLGFSSGLANLNNHHGDYRNGFSTTTSNNDNYSSIFGSSMGSSSTTPVMSSLLSSTLLQQKFMTTVGGGGDGNGGGNGNGNSGGNGGMKGDIFHHQDMKMEGNSRSEVEMMASKEGLNRLDQWNNTHMNGNGATFQNQMENMGLSDSGYWNNSNNNNNIATTGLSSVWSTDQPNNIGSNSVTSLI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01945 393 MobiDBLite consensus disorder prediction 106 160 - -
Tsu02g01945 393 MobiDBLite consensus disorder prediction 276 301 - -
Tsu02g01945 393 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 41 367 - -
Tsu02g01945 393 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Tsu02g01945 393 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Tsu02g01945 393 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Tsu02g01945 393 MobiDBLite consensus disorder prediction 374 393 - -
Tsu02g01945 393 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 367 IPR045174 GO:0003700|GO:0006355
Tsu02g01945 393 MobiDBLite consensus disorder prediction 120 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01945 Tsu-Chr2 18378641 18380057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01945 47 122 C2C2-Dof Transcription Factor Family AT5G65590 71.053 9.25e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g01945 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01945 - - cam:101512658 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01945 02 18378641 18380057 Tsu02g01945 02 18378641 18380057 ECH
Tsu02g01945 02 18378641 18380057 Tsu08g04062 08 58844827 58846017 PCT