Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01943 ATGCGGAGACCATTTGTAATTAATCTTATTAATATTCGTGCTTTCTTGGACAAGAGGATCTCACAGGAAGTCCTTGGTGATGCTTTGGGAGAGGAATTTAAGGGAtatgttttcaaaatcactGGTGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACACCTGGCCGTGTTCGCCTCTTGCTCCATCGAGGAACTCCTTATTTCCGTGGATACGGAAGGCGTAATGGAGAGCGTAGAAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTTTCTGTTTTGAACTTAGTAATTGTGAAGAAAGGTGAAAATGATTTGCCAGATCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCTTCCAAAATCCGAAAGTTGTTCAACCTGTCAAAGGAGGAGGATGTGCGAAAATATGTTAACACGTACCGTAGAACCTTTACCACCAAGGCTGGGAAAAAGGTTAGCAAAGCTCCAAAGATTCAACGTCTGGTCACTCCTTTGACACTCCAAAGGAAGCGCGCAAGAATTGCAGACAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCAGAATATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCAAAGAAGAGGTCTAGACTATCCACTGCTACAAAGCCTGTCACA 705 0.4454 MRRPFVINLINIRAFLDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPYFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPDLTDVEKPRMRGPKRASKIRKLFNLSKEEDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTATKPVT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01943 235 Coils Coil 177 204 - -
Tsu02g01943 235 ProSitePatterns Ribosomal protein S6e signature. 40 51 IPR018282 GO:0003735|GO:0005840|GO:0006412
Tsu02g01943 235 Pfam Ribosomal protein S6e 11 116 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu02g01943 235 PIRSF RPS6e 6 234 IPR014401 GO:0003735|GO:0005840|GO:0006412
Tsu02g01943 235 Gene3D - 121 222 - -
Tsu02g01943 235 PANTHER 40S RIBOSOMAL PROTEIN S6 11 233 - -
Tsu02g01943 235 SMART Ribosomal_S6e_2 5 116 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu02g01943 235 PANTHER 40S RIBOSOMAL PROTEIN S6 11 233 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu02g01943 235 MobiDBLite consensus disorder prediction 208 235 - -
Tsu02g01943 235 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01943 Tsu-Chr2 18355454 18359049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01943 51 230 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 90.000 4.50e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01943 K02991 - gmx:100786559 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01943 02 18355454 18359049 Tsu08g04070 08 58893377 58896332 PCT