Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01882 ATGGGTTTGAGTTCTAAACAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACTTTATTGGAATCACAAGATTTAGAACTTCCAAAGCCTCATCATCTAATGAGaaaacaacaacagcaacaacaacaacaaactcagcaacaatcAGAACATTTGAATTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTATTATAACAATTACAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGCGGAACACTACGCAATGTTCCGGTTGGTGGTGGAAGAAAGAATAAGAGAAGCAAAAAATCAACCACACCAGTTAGTTCTTCAACCACCATagctactactactactacttgcACCTCAATTGTTGCTAATATGAATGGTGGTTTGAATAGCAATATCACAATTCAAAACCCTCTTGGAGTTAGTGATCAAAAAACCATTCCCTCATCTCTATATCAAGCTCTTATTCATCCACCATCTTTGCTTCTACAACAGAATATGATGAATACAAGAGACTTATCAGAAAGCAAAGATTTCGGTATTGGTATTGGTAATGGTCATCATGGTAATGGAATTTTTACTAGTACTAGTTCAACTTTGAATCTtcctcatcaaaatcaaagcatGATCTTTCCCTTTTCAACTTCAACTTCATTTGACACAACTACTTGTTCATCTTCTAATGTTTATTACTATGGAGAAGAGTTTAAAACAATGGACGAACCAATAATTCCAAGCACTAGCTGCACTAACACAAAGCCATGGGAGATACCTGCATCAGCAGCAGCGGCGGCAGCAGcggcagcagcagcaacaactgGTGGAATGGAAGCTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTAGTATCAACTGATCTAAAGAATCCTTATTGGGATGATTCTGATATCAAACCTTGA 951 0.326 MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQQQQTQQQSEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRSKKSTTPVSSSTTIATTTTTCTSIVANMNGGLNSNITIQNPLGVSDQKTIPSSLYQALIHPPSLLLQQNMMNTRDLSESKDFGIGIGNGHHGNGIFTSTSSTLNLPHQNQSMIFPFSTSTSFDTTTCSSSNVYYYGEEFKTMDEPIIPSTSCTNTKPWEIPASAAAAAAAAAAATTGGMEASKYWNWEDIDSLVSTDLKNPYWDDSDIKP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01882 316 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Tsu02g01882 316 MobiDBLite consensus disorder prediction 35 54 - -
Tsu02g01882 316 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Tsu02g01882 316 MobiDBLite consensus disorder prediction 33 54 - -
Tsu02g01882 316 MobiDBLite consensus disorder prediction 94 117 - -
Tsu02g01882 316 PANTHER OS06G0284500 PROTEIN 39 237 - -
Tsu02g01882 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 237 IPR045174 GO:0003700|GO:0006355
Tsu02g01882 316 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01882 Tsu-Chr2 17588512 17590126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01882 49 201 C2C2-Dof Transcription Factor Family AT5G66940 41.071 2.00e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g01882 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01882 - - mtr:MTR_4g089095 476.092