Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01412 atGAGTGAAGGAAACAACAAAATGTTTCCAATTTGGTTAATCACCATTGCAGTAGTAATAGCATCAAGTATTGCATTAACACAAGCACAACCAGAAGCAAATTTCCGGTGTTTAACAGAAAACGCCACGTGTCGCAGCATAACAGAATACACAAACCCAAACACAACAACCTTAAAAGAAATCACAACCCTCTTCGGCATAAAACACTACCTAGACTTCCTCGGAGCTAACAACCTTccaacaaacacacaaaacaattACAAAGTAAGTCCAAACACAGTCATCAAAGTTCCATTTCCCTGTAAATGCAATAACGGAACAGGAAAATCGAACCATGTTCCAAAgtacaaaattaaaccgggtgACACGTTGGATGATATAGCAAGAACCCGGTTCAATGCTTTGGTTAAATATCAACAGATCCAAACCGCTAACAAGATTGTTGATGCTAATAATATAACTGCTGGTGATACGATTTGGATTCCTTTGCCTTGTAGTTGTGATAAGGTGGATGGGAACAGTGTGATGCATTATGCACATATTGTTGAATCTGGAAGTAGTATTCCATCTATCGCTCAAGAATATGGTACTACTCAACAAAGTTTACTCACAATTAATGGTATTAAAGATCCTAATTCACTTCAAGCCGGTCAGGTTCTTGATGTTCCTCTTCCAGTTTGTAACTCTAGTGTGAAAAGTGATTCATTGGATTTTCCATTGCTTGTACCAAATGGGACTTATTTCTACACTGCAAATCAATGTGTCAAATGTAGTTGCAATTCTATCAACAAGTTTGTGTTACAATGTGAGCCATCAAACCAAAAACCGATAAATAATTGGTCGGTTTGTCCATCTACGAGATGTTCTGGGAGTGTGTTGCTTGGGAACACTACATCATCAGATTCGTGTAGTCGTACAGTTTGTGATTACACTGGTTATACGTCTAGCAATATCTCTACTGCTATTGTTACGCAAAACACCTGTGCTGTGGCACCGAGCGGTGGCGGTGGCAATTCGGATTCAGGGGCAACCAAGAGCATATTGAATAAGCTTCTTGTTCTCATTCACTTCCTCCTCttttttgtttatcttttgTAG 1098 0.3734 MSEGNNKMFPIWLITIAVVIASSIALTQAQPEANFRCLTENATCRSITEYTNPNTTTLKEITTLFGIKHYLDFLGANNLPTNTQNNYKVSPNTVIKVPFPCKCNNGTGKSNHVPKYKIKPGDTLDDIARTRFNALVKYQQIQTANKIVDANNITAGDTIWIPLPCSCDKVDGNSVMHYAHIVESGSSIPSIAQEYGTTQQSLLTINGIKDPNSLQAGQVLDVPLPVCNSSVKSDSLDFPLLVPNGTYFYTANQCVKCSCNSINKFVLQCEPSNQKPINNWSVCPSTRCSGSVLLGNTTSSDSCSRTVCDYTGYTSSNISTAIVTQNTCAVAPSGGGGNSDSGATKSILNKLLVLIHFLLFFVYLL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01412 365 CDD LysM 180 222 IPR018392 -
Tsu02g01412 365 Pfam LysM domain 116 162 IPR018392 -
Tsu02g01412 365 Pfam LysM domain 180 223 IPR018392 -
Tsu02g01412 365 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
Tsu02g01412 365 SUPERFAMILY LysM domain 178 224 IPR036779 -
Tsu02g01412 365 SUPERFAMILY LysM domain 115 163 IPR036779 -
Tsu02g01412 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 20 329 - -
Tsu02g01412 365 Gene3D LysM domain 113 168 IPR036779 -
Tsu02g01412 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 20 329 - -
Tsu02g01412 365 CDD LysM 116 161 IPR018392 -
Tsu02g01412 365 Gene3D LysM domain 169 235 IPR036779 -
Tsu02g01412 365 ProSiteProfiles LysM domain profile. 178 222 IPR018392 -
Tsu02g01412 365 SMART LysM_2 115 162 IPR018392 -
Tsu02g01412 365 SMART LysM_2 179 223 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01412 Tsu-Chr2 12319299 12322160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01412 16 356 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 41.570 3.83e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01412 - - cam:101506878 496.123