Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01372 ATGGTTTTTCCAAAACCAGCTTCTGAGTCTGACCTTTTTCTTCCCTATAACTTTACCTCTCCTTATAATACAGACTCTCTTCCTAGGTTCAGTATACCAGAAAACTCAATGCCAAAGGAAGCTGCATACCAAAACATACATGAAGAGTTGCAGCTGGATGCTATTCCAAAGTTGAACTTGGCTTCCTTTGTCACAACATCCATGGAGGAAGAATGCAATAAGCTTATTATGGAATCAATCAACAAGAACTATGTTGACATGGATGAATATCCAGCTACTACTGATCTTCATAACCGATGCGTGAACATGATTGCGCGTATGTTCAATGTTGAGATTGGAGAAAATGAGAGTGCAATTGGTGCAGGAACAGTTGGATCGTCCGAGGCCATAATGTTGGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAACGCAAGGCCGAAGGCAAACCTTATGATAAGCCTAACTTGGTCACTGGTGCCAATGTGCAAGTATGTTGGGAGAAATTTGCTAGGTATTTTGAGGTGGAATTGAGGGAAGTAAATGTGAGAGAAGATTACTATGTAATGGACCCTGCGAAGGCCGTTGAGATGGTAGACGAGAACACAATTTGCGTGGCTGCAATCTTAGGTTCAACTTATAACGGAGAATTCGAAGATGTCAAACTCTTGAATGATCTCTTGTTAGAGAAAAACAAGCAAACTGGATGGGATACACCGATTCATGTTGATGCCGCGAGTGGTGGCTTTATTGCTCCTTTCTTATATCCTGACCTAGAGTGGGATTTCAGACTCCCATTAGTGAAGAGCATAAATGTTAGTGGCCATAAGTATGGACTAGTTTATGCCGGAATCGGCTGGGTTATATGGAGAACCAAAGAAGATTTGCCAGAAGACCTAATCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACtctaaatttttcaaaagGTTCTAGTCAGATAATTGCGCAATATTATCAGCTAATTCGCCTTGGTCAAGAGGGGTACCGGCGTATAATGGAGGACTGTAGAGAAAACACAATGGTGTTGAAGAAACATTTAGAAGAGACGGGATACTTTAACATACTCTCAAAAGATAACGGAGTTCCTGTAGTGGCATTTTCTCTGAAGGACAGAAGCCAATACGATGAATTCAAGATATCAAAGATGCTGCGACGCCACGGTTGGGTTGTGCCGGCATATCCAATGCCACCAGGTGCTGAACACATTAAAGTACTTCGTGTGGTCATCAGAGCTGAGTTTTCACGCACACTTGCTGAACGCCTTGCTCTTGACATAAAAAACGTGCTGCGTGAGCTTCAAAAACTTCCCCTCAACATTAATGATGAGAAGTCCTTGGTTGACACTGCATTAGAAGCAAACAGGGAAATCATTGCTCAAGAATCCAATAAGCGCCAGAAAATAATGGCTGCCTAG 1449 0.421 MVFPKPASESDLFLPYNFTSPYNTDSLPRFSIPENSMPKEAAYQNIHEELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARMFNVEIGENESAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGANVQVCWEKFARYFEVELREVNVREDYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEDLIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRRIMEDCRENTMVLKKHLEETGYFNILSKDNGVPVVAFSLKDRSQYDEFKISKMLRRHGWVVPAYPMPPGAEHIKVLRVVIRAEFSRTLAERLALDIKNVLRELQKLPLNINDEKSLVDTALEANREIIAQESNKRQKIMAA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01372 482 Gene3D - 361 448 - -
Tsu02g01372 482 Gene3D - 66 360 IPR015421 GO:0003824
Tsu02g01372 482 Gene3D - 1 65 - -
Tsu02g01372 482 CDD DOPA_deC_like 59 438 - -
Tsu02g01372 482 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tsu02g01372 482 SUPERFAMILY PLP-dependent transferases 18 446 IPR015424 -
Tsu02g01372 482 PANTHER GLUTAMATE DECARBOXYLASE 1 481 - -
Tsu02g01372 482 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tsu02g01372 482 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 18 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01372 Tsu-Chr2 11917367 11919667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01372 1 470 Calmodulin-binding Proteins AT2G02010 74.160 0.0 748
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01372 02 11917367 11919667 Tsu02g01372 02 11917367 11919667 ECH