Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01353 ATGGAGAACAATCCTCTTCACCTTTTACCTCACCTCACTGTAACACTCCTTATGATGATCATAACAGTTTTCTTTCCTATGAGTACTGCTGAATCAGCTGCATCACTTTCCTCTATCAAAACTGATGCAAAAGCTCTTCTTACATTCAAAAACTTGATTCAGAAAGATCCAAATGGAGTTTTATCAGGTTGGAATCCAAAAACAAATCCATGCACCTGGTATGGTATATCTTGCACACATGGAAGAGTAACAGGTCTTGATATTAGTGGAAGCAATGATATTTCTGATACTATTTCTCTTGATCCTTTATATTCCTTAAATATGTTATCTGTTCTCAAACTTTCTTTCAATTCATTTGCTGTAAATTCTACTTCTTTGCTTCAGTTACCATTTAGTTTAACACAACTTGATCTATCTTTCGGTAACGTCACCGGTCCTATTCCTGAAAGTTTATTGTCCAAGTGTCCTAATCTTGTTGTTGTGAATCTTTCTTACAACAATTTGACAGGTTCTATACCTGAAAATTTCATGAAAAGTACTGATAAACTTCAATCTCTTGATCTTTCTTCAAACAATTTGACAGGTTCAATTTTTGGTTTGAAAATTGAGTACTGTAAATCATTGTTGCAACTTGATATATCAGGAAACCATTTATCAGACTCAATTCCAATCTCTTTGTCAAATTGCACCAGTCTTAAGAGTTTGAATTTAGCAAACAATCTTATTTCTGGTGGAATTCCGAAGAATTTCGGTCAGTTGAATAAATTACAGTCTTTGGATCTTTCACACAATCAAATTACTGGTTGGATCCCTTCTGAATTGGGAAATTTATGTGGTTCTCTTTTAGAACTTAAACTTTCTTTCAACAATATTACAGGTTCAATTCCATCTGGTTTCTCTTCTTGTGCTTTGctgcaacttgttgatatatcaAACAATAATTTGACAGGTGAAGTACCTGAGTCGGTGTTTCGGAACCTTGGTTCACTGGAGGAACTTAGGTTGGGAAACAATGCTATCTCTATGAAATTTCCATCTTCAATATCATCATGCAAAAAATTGAGGATTGTGGATTTTagttcaaataaaatttatggaTCTATCCCTAGAGATTTGTGTCCAGGTGCAGCCTCACTTGAGGAGCTGAGAATGCCTGATAATCACATAGCAGGTGAGATTCCAGCTGAATTGTCAAAGTGTTCACAATTGAAGACTATTGATTTTAGTTTGAACTATTTGAATGGTACAATTCCTGATGAGTTAGGAGAACTTGAGAATCTTGAGCAGTTAATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCAAAGTTGGGACAATGTAAGAATCTTAAGGATCTTATATTGAATAATAATCACCTTAGTGGTGGAATTCCAATTGAGCTGTTCAATTGTAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCACCGGGGAAATACCGCGAGAGTTCGGCCTTTTGACAAGGTTGGCAGTTCTTCAGCTTGGTAATAACAGGTTTACAGGTGAGATACCATCAGAGCTAGCAAATTGCAACAGTTTGGTGTGGTTGGATTTGAACAGCAACAAGCTCACAGGAGAGATCCCTCCTAGACTTGGCAGGCAGCAAGGAGCAAAATCGTTGTTTGGCATTCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTCGGAAACTCTTGTAAAGGAGTTGGTGGTTTGCTAGAGTTCTCAGGAATCCGATCCGAACGGCTCTCACAGGTACCGACATTGAGGACTTGTGATTTCACAAGACTGTATTCTGGTCCTGTACTCAGCTTGTTTACAAAATACCAAACACTAGAGTATCTTGATCTCTCCTACAACCAGCTTCGTGGAAAAATACCGGATGAATTCGGAGATATGGTGGCCTTACAGGTACTTGAATTGTCTCACAATCAACTATCTGGTGAAATCCCTTCAACCCTGGGACAGCTAAAAAATTTGGGAGTGTTTGATGCATCACATAATAGACTTCAGGGTCAAATCCCAGACTCATTCTCAAACCTATCATTTTTGGTGCAAATAGACTTATCTTACAATGAGTTAACAGGTCAAATTCCATCTAGGGGACAACTAAGTACGCTTCCGGCCACTCAGTATGAAAATAATCCAGGCCTTTGTGGCGTTCCGTTGCCCGAGTGCAAGAGTGGCAACAGCCAATCCTCATCAAGTCCAAGTGATGATGTTAGCAGCGGAGGCCAAAGAAGATCAGGTGCATCATGGGCTAACAACATTGTCATGGGAGTTCTCATTTCTGTGGCTTCTGTTTGCATTTTGATTGTGTGGGCGATCGCAATGCGTGTAAGGAAGAGAGAGGCCGAGGAAGTCAAGATGCTTAATAGGTTGCAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCACTAAGCATTAATGTTGCAACATTTCAGAGGCAGTTAAGGAAACTTAAATTCTCACAGTTGATTGAAGCAACCAATGGATTCTCAGCAGAAAGCCTAATTGGTTGTGGTGGTTTTGGTGAAGTGTTCAAGGCTACACTCAAAGACGGATCATCTGTTGCGATAAAGAAGCTCATTCGATTGAGTTGCCAAGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGAAAAATCAAACACAGAAATCTTGTCCCTCTATTAGGATACTGCAAAGTAGGTGAAGAGAGACTCCTTGTTTACGAATACATGGAATACGGAAGCCTAGAAGAGATGCTCCACGGAAGAATAAAGACACGCGATCGCAGAATTTTAACATgggaagaaaggaagaaaattgCAAGAGGTGCTGCCAAAGGACTTTGTTTTCTGCATCATAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGATCATGAAATGGAGTCAAGGGTCTCGGATTTCGGAATGGCAAGACTAATAAGTGCACTTGATACACACCTCAGTGTAAGCACACTAGCAGGAACACCTGGATATGTTCCACCAGAGTACTATCAAAGTTTTAGGTGCACTGCAAAGGGCGATGTTTATTCATTTGGCGTTGTAATGTTGGAACTTGTTAGCGGGAAACGTCCTACTGATAAAGAGGATTTTGGTGACACAAACTTGGTTGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAGATGGAAGTAATTGACAGTGATTTGCTTTTGGAAACTCAAGGAGGAACAAATGAAGCCGAAGTAAAAGAAGTTAAAGAAATGATAAGGTATTTAGAGGTTACTTTGCGGTGTGTCGATGACATGCCATCTAAAAGGCCAAGCATGTTGCAGGTAGTAGCCATGTTGAGAGAGCTTATGCCTGGATCAAATGATGGAAGTAGCAACAGTGCTTAA 3420 0.3898 MENNPLHLLPHLTVTLLMMIITVFFPMSTAESAASLSSIKTDAKALLTFKNLIQKDPNGVLSGWNPKTNPCTWYGISCTHGRVTGLDISGSNDISDTISLDPLYSLNMLSVLKLSFNSFAVNSTSLLQLPFSLTQLDLSFGNVTGPIPESLLSKCPNLVVVNLSYNNLTGSIPENFMKSTDKLQSLDLSSNNLTGSIFGLKIEYCKSLLQLDISGNHLSDSIPISLSNCTSLKSLNLANNLISGGIPKNFGQLNKLQSLDLSHNQITGWIPSELGNLCGSLLELKLSFNNITGSIPSGFSSCALLQLVDISNNNLTGEVPESVFRNLGSLEELRLGNNAISMKFPSSISSCKKLRIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNHIAGEIPAELSKCSQLKTIDFSLNYLNGTIPDELGELENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLSGGIPIELFNCSNLEWISLTSNELTGEIPREFGLLTRLAVLQLGNNRFTGEIPSELANCNSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRSERLSQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSYNELTGQIPSRGQLSTLPATQYENNPGLCGVPLPECKSGNSQSSSSPSDDVSSGGQRRSGASWANNIVMGVLISVASVCILIVWAIAMRVRKREAEEVKMLNRLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELVSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDSDLLLETQGGTNEAEVKEVKEMIRYLEVTLRCVDDMPSKRPSMLQVVAMLRELMPGSNDGSSNSA 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01353 1139 Gene3D - 554 610 - -
Tsu02g01353 1139 CDD STKc_IRAK 847 1127 - -
Tsu02g01353 1139 Pfam Brassinosteroid receptor island domain 551 609 IPR045381 -
Tsu02g01353 1139 Gene3D Ribonuclease Inhibitor 107 729 IPR032675 -
Tsu02g01353 1139 SUPERFAMILY L domain-like 591 726 - -
Tsu02g01353 1139 PRINTS Leucine-rich repeat signature 183 196 - -
Tsu02g01353 1139 PRINTS Leucine-rich repeat signature 253 266 - -
Tsu02g01353 1139 ProSiteProfiles Protein kinase domain profile. 841 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01353 1139 SMART serkin_6 841 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01353 1139 SUPERFAMILY L domain-like 63 321 - -
Tsu02g01353 1139 SUPERFAMILY RNI-like 246 549 - -
Tsu02g01353 1139 SMART LRR_typ_2 327 351 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 636 660 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 496 520 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 522 544 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 253 277 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 424 448 IPR003591 -
Tsu02g01353 1139 SMART LRR_typ_2 449 472 IPR003591 -
Tsu02g01353 1139 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 28 1128 - -
Tsu02g01353 1139 Pfam Protein tyrosine and serine/threonine kinase 844 1124 IPR001245 GO:0004672|GO:0006468
Tsu02g01353 1139 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 28 1128 - -
Tsu02g01353 1139 MobiDBLite consensus disorder prediction 726 750 - -
Tsu02g01353 1139 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Tsu02g01353 1139 SUPERFAMILY Protein kinase-like (PK-like) 822 1124 IPR011009 -
Tsu02g01353 1139 ProSiteProfiles Leucine-rich repeat profile. 255 278 IPR001611 GO:0005515
Tsu02g01353 1139 Pfam Leucine rich repeat 132 193 IPR001611 GO:0005515
Tsu02g01353 1139 Pfam Leucine rich repeat 309 364 IPR001611 GO:0005515
Tsu02g01353 1139 Pfam Leucine rich repeat 208 266 IPR001611 GO:0005515
Tsu02g01353 1139 Pfam Leucine rich repeat 608 649 IPR001611 GO:0005515
Tsu02g01353 1139 ProSitePatterns Protein kinases ATP-binding region signature. 847 870 IPR017441 GO:0005524
Tsu02g01353 1139 Gene3D Phosphorylase Kinase; domain 1 800 916 - -
Tsu02g01353 1139 Gene3D Transferase(Phosphotransferase) domain 1 917 1137 - -
Tsu02g01353 1139 MobiDBLite consensus disorder prediction 729 750 - -
Tsu02g01353 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 965 977 IPR008271 GO:0004672|GO:0006468
Tsu02g01353 1139 Gene3D Ribonuclease Inhibitor 31 103 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01353 Tsu-Chr2 11750375 11753833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01353 17 1127 Receptor kinase-like Gene Family AT1G55610 47.232 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu02g01353 PK_Tyr_Ser-Thr 8.3e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01353 02 11750375 11753833 Tsu02g01353 02 11750375 11753833 ECH