Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00168 ATGATCAAAGTCATGAAAAGTGATGCAGATGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTATGTCATGGTTGTGACAATTTGGTTCATTCTGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCTTCTGCTAAGGTAACAACTACAGCACAAGCATGGCACAGTGGCTTCACACGAAAAGCAAGAACGCCACGCCATAACAAAAATTCGTCgattcaacaacaacaacaacgtcTCAAGGAGAAAGTTCTATTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTCGGAGGCGATGAGGAACAAGGACAAGAACTACTAGTTGATATTGATGAGACTGAGGAGGAGAATTTACTTTGTCGAGTACCGGTTTTTGATGTCGATCCATTTGATTTAGAGAATTGTAATGTGAAAAATGATGGTGCTGATTTTGAGGAAATGTGTGACTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATAATGAGAATATTCATCATGAGAATTCAACAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATAGATGCATCTAAAAATGAAGTGTTAAAGGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAGTAATGAATCATTAGCACATCATCAAGAGAAAGAGTTTGTAATGGTGAGTAATAATTGTAGTGTTGGTGTTAATGAGAGTGTTATTAGTACTAAAGAGgaaacaaagagagagagatttttGAGACTAAATTATGAAGAAGTTATTAGTGCTTGGAGCAGACAAGGTTCTCCTTCTCCATGGACTACTGGAAATCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGAGGACAATTGATGGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTacagagagaaaagaagaacaCGTTTATTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAAAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACATCATGTTTTGTTGGAGGAGGAACCACTTCTTTTCCCACAAATTACCACTGA 1272 0.3538 MIKVMKSDADAGALGGKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGDEEQGQELLVDIDETEEENLLCRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNNENIHHENSTGQVFDYKQENEIDASKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNSNESLAHHQEKEFVMVSNNCSVGVNESVISTKEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGGTTSFPTNYH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00168 423 Pfam CCT motif 364 406 IPR010402 GO:0005515
Tsu02g00168 423 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 411 - -
Tsu02g00168 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 6 411 - -
Tsu02g00168 423 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Tsu02g00168 423 ProSiteProfiles CCT domain profile. 364 406 IPR010402 GO:0005515
Tsu02g00168 423 SMART bboxneu5 17 64 IPR000315 GO:0008270
Tsu02g00168 423 CDD Bbox1_BBX-like 21 64 - -
Tsu02g00168 423 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00168 Tsu-Chr2 1292689 1295002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00168 11 412 C2C2-CO-like Transcription Factor Family AT1G68520 42.824 3.33e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu02g00168 zf-B_box 5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00168 02 1292689 1295002 Tsu02g00168 02 1292689 1295002 ECH