Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00154 ATGGCGACGCCATTGGATTGCGTAGGAGGAGGTGTGACGTTTCTCTCCAATTCAACCAAAAAACTCGATTCCTCTTCATCTCTCAATGCTTCTTTAAACTGCTCCAAACTCGATTCaccaattttgattttcttattctttcataaAGCGATTCGGAATGAACTTGAAACTTTACACAGATTAGCCATGGCATTTGCTACCGGTAATCGCACCGATATTCAGCCACTCTTCGATCGTTACCATTTTCTcagctctatttatagacacCACTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTAGACAGACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAGCATAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCCATCAAGAATGATGAGAGTTTTCCAAGAGAATTAGCATCTTGCACAGGAGCTTTACAGACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAATTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCTGATGAATCTCAGGATTTACGAGATTTCTTAATCAAAATTGTGCCGGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGCAGTGTTAACACAATTCAAAGTAGTGCAGTTCATTCTCAAGGTCAATGTTATTCTAGCCCATTAACCCATCAGGTTGGAAGAGTAAATTGTGTATGCGAGGCCACAACAACTGGAAAAAGGAAACATTTTGGATCTATGCTAGATGTTTCTGATACCACCAGAACACATCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAGAATACAACACTCTGGAGATTTTACCGACATATCAGCCTTTAATGACAGACTGCAATTCATTGCCGACGTTTGCATATTTCATAGCATTGCTGAGGACAAGGTTATTTTTCCAGCGGTAGATGGagaattttctttctttcaggAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGATGGAGCATCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACTATACAGAGGCATTTCCACAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAGGGTCTTTAACTGAAGAAGAAGCAAAGATGTTTCTGAGAAACATGCAATTTGCAGCTCCAGCAACAGATTCTGCTCTGGTCACACTCTTCAGTGGTTGGGCATGCAAAGCTCGGAATGAAGGCCTGTGTTTGTCTTCGGGCACATCAGTTTGCTGCCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGATCAGCCATCCTGTGTTTGTATCACAGCATCATCTGATAGACATTGCTCAGTAATATTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACATTGAAGTTGAACAATGGAGATGTACCTGAAACTTCAGAGACTGAAAGTACCCAGAAACAGTGCTGTAGTCCTCGGTCCTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGGGGATTAGTTCAATTTCTACAGCCAAGTCTTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCATATCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGTGACGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAACTGAGTGGTAGCGACGAGACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCATAATGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTCGAAGATATTTCTTGCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCCTTGCAGTTGACCCATATGGCAGAGGATTTGAGTGACAATAATTTTGGAACTTCTGATGCCAATGACAGTGATGATGTCAAGAAGTATAAGGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAACTGTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACTGGCGCTGAAGTTCTCCAGTCGATGTTACCGTGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCAGAATCTATAGCACAGACAGAAATATCACATCGTAGCACTTCTCATAAAGGATCTGAGTATCAGGAATGCTTGGACCTCAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTCATCTGAAGGATCATCTAATGGTGTCGAAATAGAAGGACACTCACCATCATTTCGGGACCCAGGGAAACTTGTATTTGGGTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATTGGGCCTATATGCATGACACCTTCATGTAATGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAaattttttgatgatgaaaGGTACCTTTTATTTCTTACACCACACTTCAaaatttgttattga 3258 0.3932 MATPLDCVGGGVTFLSNSTKKLDSSSSLNASLNCSKLDSPILIFLFFHKAIRNELETLHRLAMAFATGNRTDIQPLFDRYHFLSSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSIKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSVNTIQSSAVHSQGQCYSSPLTHQVGRVNCVCEATTTGKRKHFGSMLDVSDTTRTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSDGASSNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEEEAKMFLRNMQFAAPATDSALVTLFSGWACKARNEGLCLSSGTSVCCPAQRLSDIEENIDQPSCVCITASSDRHCSVIFESDGNKRPVKRNTLKLNNGDVPETSETESTQKQCCSPRSCCVPGLGVNSNNLGISSISTAKSLRSLSFSSSAPYLNSSLFIWETESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSGSDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQLTHMAEDLSDNNFGTSDANDSDDVKKYKELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESIAQTEISHRSTSHKGSEYQECLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKASSEGSSNGVEIEGHSPSFRDPGKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERYLLFLTPHFKICY 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00154 1085 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 1084 - -
Tsu02g00154 1085 CDD Hr-like 43 169 - -
Tsu02g00154 1085 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Tsu02g00154 1085 Gene3D nmb1532 protein domain like 37 189 - -
Tsu02g00154 1085 Gene3D nmb1532 protein domain like 299 447 - -
Tsu02g00154 1085 SUPERFAMILY CHY zinc finger-like 988 1048 IPR037274 GO:0008270
Tsu02g00154 1085 CDD Hr-like 647 807 - -
Tsu02g00154 1085 PANTHER CHY ZINC FINGER PROTEIN 27 1084 - -
Tsu02g00154 1085 MobiDBLite consensus disorder prediction 960 979 - -
Tsu02g00154 1085 Pfam Hemerythrin HHE cation binding domain 297 431 IPR012312 -
Tsu02g00154 1085 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Tsu02g00154 1085 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Tsu02g00154 1085 CDD Hr-like 300 429 - -
Tsu02g00154 1085 MobiDBLite consensus disorder prediction 960 976 - -
Tsu02g00154 1085 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1085 IPR017921 -
Tsu02g00154 1085 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Tsu02g00154 1085 Gene3D nmb1532 protein domain like 641 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00154 Tsu-Chr2 1155470 1162608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00154 39 1084 C2H2 Transcription Factor Family AT3G18290 65.847 0.0 1388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00154 02 1155470 1162608 Tsu02g00154 02 1155470 1162608 ECH