Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00148 ATGCAAAAAAACATAGACAGTTTTTCGTGTCAGAATAAGAATGTTAGcaataaacatgttttttatgTGGTGAGGAATGAAACTCAGttacaaaacaatttattaGTACTTGAGAAATGTGGAGGTAATGTTCAAGTGCAAGTTTCTATGGATGGTGTTTCTGAGAATGGAGTTGATGCTCTTGAACAAGGATTTGATGTGAAATATGATGAAGGTGCAGGGTGGTCCTCTGAGTGTAATGTGTGTAGAGAATCTGGAGGAACTTGTGGTACAAATCAGAATGATTCTTCTAAATTTTCTTGTTATTGTTCTGCTGGAAGTGAAACTGATCATGCTGGACAGTGTTCAAGTTCATCTCACAAAAgTGGAAACAAGAAAAAAGTGTTGAAGCTGGTCTTAGGTTTCTTAGGTACTGGAATGTTACTACCTCTTATTGCAGTCACTATATGCCGAAATAAAGCAAAGATATGGAAGTTTTTGAAAACACAATTCAGCAAAATAACAAGGAACAATCAACATATAGAAGCTTTTCTTGAAAGTCAAGGTCCTCTAAATATAAAGAGATACAATTACTCTGATATAAAGAAAATGACTGAATCATTCAAAGTTAAACTAGGAGAAGGTGGTTATGGTTCTGTATACAAAGGAAAATTACTCAATGGTTCTTCTGTGGCTGTAAAAGTGCTTAATGAGTCAAAAGGGTGTGGTGAAGATTTCATCAATGAAGTTGCAAGCATATGCAAAACATCTCATGTTAATGTTGTCACTCTTCTCGGATTTTGTCTCGATGGAACCAAAAAAGCTCTCATTTATGAGTTTATGTCCAATGGTTCGCTCGAAAAGTTCattcacaatcacaacacaGAAACCGAAAAGACCGAACAAACTAAAACTAGTCCTAGTCCTAATCCATCATTGAGTTGGGAGAATTTACATCAGATTGCAATAGGGATAGCTCGCGGACTAGAGTATTTGCATAAAGGATGCAACACTACGATTCTACATTTCGACATTAAACCGCATAATATTCTTTTGGATGAAACATATCGTCCGAAGATATCTGATTTTGGTCTTGCTAAGCTAAACACGAGCAATGAGAGCATTATTTCAATGTCAAATGCTAGAGGGACGGTCGGATATGTAGCACCTGAAGTTTTCAACAAAAGCTTCGGAGGCGTTTCACACAAGTCTGATGTCTATAGTTATGGAATGATGCTGTTAGAAATGGTTGGTGGACGGAAGAACGTTAACATTGTTGAAGCTAGTCAATCCTCGAGCGAGATGTATTTTCCGCATTTGGTGATTTATAAGAAGCTTGAGAATGGAAAAGATTTGGAACTTGATGATGAGGTAATGTCCAATGTGGAAAATGAGATAGCTAAGAAATTGACTATGGTTGGTTTGTGGTGCATTCAAACAATTCCAACTCATAGACCTACAATAAGTAAAGTGATTGATATGTTGGAAGGTAACTTGGATTCTTTGGAAATGCCACCAAAACCTGTTATGTTTTCTCCTGAAAGATCAATACCAGAAttttcaacatcaacaacaaaatcattgGAAAGCATCTAA 1575 0.3498 MQKNIDSFSCQNKNVSNKHVFYVVRNETQLQNNLLVLEKCGGNVQVQVSMDGVSENGVDALEQGFDVKYDEGAGWSSECNVCRESGGTCGTNQNDSSKFSCYCSAGSETDHAGQCSSSSHKSGNKKKVLKLVLGFLGTGMLLPLIAVTICRNKAKIWKFLKTQFSKITRNNQHIEAFLESQGPLNIKRYNYSDIKKMTESFKVKLGEGGYGSVYKGKLLNGSSVAVKVLNESKGCGEDFINEVASICKTSHVNVVTLLGFCLDGTKKALIYEFMSNGSLEKFIHNHNTETEKTEQTKTSPSPNPSLSWENLHQIAIGIARGLEYLHKGCNTTILHFDIKPHNILLDETYRPKISDFGLAKLNTSNESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGRKNVNIVEASQSSSEMYFPHLVIYKKLENGKDLELDDEVMSNVENEIAKKLTMVGLWCIQTIPTHRPTISKVIDMLEGNLDSLEMPPKPVMFSPERSIPEFSTSTTKSLESI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00148 524 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 6 524 - -
Tsu02g00148 524 Gene3D Phosphorylase Kinase; domain 1 173 273 - -
Tsu02g00148 524 Pfam Wall-associated receptor kinase C-terminal 10 105 IPR032872 -
Tsu02g00148 524 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 524 IPR045874 GO:0004672
Tsu02g00148 524 Gene3D Transferase(Phosphotransferase) domain 1 274 498 - -
Tsu02g00148 524 SUPERFAMILY Protein kinase-like (PK-like) 186 516 IPR011009 -
Tsu02g00148 524 SMART serkin_6 199 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00148 524 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524
Tsu02g00148 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Tsu02g00148 524 ProSiteProfiles Protein kinase domain profile. 199 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00148 524 Pfam Protein kinase domain 202 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00148 Tsu-Chr2 1109748 1113000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00148 3 515 Receptor kinase-like Gene Family AT1G66910 42.007 1.07e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu02g00148 Pkinase 3.4e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00148 02 1109748 1113000 Tsu02g00148 02 1109748 1113000 ECH
Tsu03g03145 03 43495353 43499067 Tsu02g00148 02 1109748 1113000 PCT