Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00146 ATGCACACTCCATTTTCTAATAACATGGACAAACTCATATTCAATTGTTGCATTGCATACTTTCTCCTTTTCACTCTCTTTTTTGTGCATGGCAAAGAATTTTCATGCAATCAAACTCCATACCCTCATGTGTGCAACCATTACATTGGTTCCACCACCACAAATACACTATCAACCCTAgattcttcttctttccatGATATGGCTCTTAAGGTTACCATGGACCAAGCCATTGAAGCACACAAACTTGTGTCAAACATGGAATTAAATAACTTCAAAGACAAGAAAGCCAAGTCAGCATGGGAAGATTGTCTAGAGCTTTATGAGGATACAATTTATCAACTCAAAAAATCAATAAACTCAAACAATCTAAATGACAAATTAACTTGGCAAAGTGCTTCTATTACAAACCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCTTCCATGTTAGGCAATTTCTCTAAATTGCTTAGCAATTCCTTGTCCATTAGCAACACTCTAGCTTCATCATATTCATCCTCgtcctcctcctcctcatcatcatcaGCATCGTTgtcaaaaactaaacaaaatggAGGAAGAAAGTTGTTGTCTGACAGATTTCCATCTTGGCTTTCAGGCTCAGATAGAAAACTGCTTCAGGCAACAACAGGAGCTGATATCGTAGTGGCACAAGATGGAAGTGGACACTATAAAACAATCTCAGAAGGTGTAGCAGGAGCTTCTAAACTTAGTGGGAAAGGAAGAGTTATTATTCATGTGAAAGCAGGTGTTTACAAAGAGAATATTGATATCAAGAGATCAGTGCAAAATTTAATGATATTTGGAGATGGAATGGATTCCACTATTGTCACTGGTAATCAAAATGCTATAGATGGCTCTACTACTTTCCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCAAAAGACATGACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCTGTGGCTCTCCGTTCCGGCGCTGACCACTCCGTCTTCTACCGTTGCGCCTTCAAAGGCTACCAAGACACCTTATACGTTTACGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACAATCGATTTCATCTTCGGTAACGCTGTTTCCGTCCTTCAAAACTCCAACATCCTCATTAGAAAACCAATGAGCAACCAACAGAACACCGTAACGGCACAAGGACGTACAGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTGGCATAACCGCCGCAGGTGATTTGAAACCAGCTCAAGGTTCTGTTAAAAGTTATCTTGGTAGACCATGGCAGAAATATTCAAGAACGGTTGTTATGAAAAGTAATATTGATGGTGTGATTAATTCTCAAGGTTGGGCTCCATGGATGGGTGGATTTGCTTTGAGTACTCTTTACTATGGTGAATATATGAATGTTGGTGGTGGTGCCGGTACCGGTGGAAGAGTTAATTGGCCTGGTTTTCATGTTATTACTAATCCTTCTGAAGCTGGTAAATTTTCTGTTGGGAATTTTTTGGCTGGTGGTTCATGGATTGCTGGTAGTGGTGTGCCGTTTGATGCAGGTTTGTGA 1632 0.3866 MHTPFSNNMDKLIFNCCIAYFLLFTLFFVHGKEFSCNQTPYPHVCNHYIGSTTTNTLSTLDSSSFHDMALKVTMDQAIEAHKLVSNMELNNFKDKKAKSAWEDCLELYEDTIYQLKKSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLGNFSKLLSNSLSISNTLASSYSSSSSSSSSSSASLSKTKQNGGRKLLSDRFPSWLSGSDRKLLQATTGADIVVAQDGSGHYKTISEGVAGASKLSGKGRVIIHVKAGVYKENIDIKRSVQNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVSVLQNSNILIRKPMSNQQNTVTAQGRTDPNENTGIVIHNCGITAAGDLKPAQGSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWMGGFALSTLYYGEYMNVGGGAGTGGRVNWPGFHVITNPSEAGKFSVGNFLAGGSWIAGSGVPFDAGL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00146 543 MobiDBLite consensus disorder prediction 182 211 - -
Tsu02g00146 543 PANTHER PECTINESTERASE 27 542 - -
Tsu02g00146 543 CDD PMEI-like_3 35 176 - -
Tsu02g00146 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 178 IPR035513 -
Tsu02g00146 543 MobiDBLite consensus disorder prediction 182 203 - -
Tsu02g00146 543 SUPERFAMILY Pectin lyase-like 227 542 IPR011050 -
Tsu02g00146 543 Pfam Pectinesterase 231 528 IPR000070 GO:0030599|GO:0042545
Tsu02g00146 543 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Tsu02g00146 543 Pfam Plant invertase/pectin methylesterase inhibitor 35 174 IPR006501 GO:0004857
Tsu02g00146 543 Gene3D - 225 543 IPR012334 -
Tsu02g00146 543 SMART PMEI_2 29 174 IPR006501 GO:0004857
Tsu02g00146 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 178 IPR006501 GO:0004857
Tsu02g00146 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Tsu02g00146 543 ProSitePatterns Pectinesterase signature 1. 257 276 IPR018040 -
Tsu02g00146 543 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00146 Tsu-Chr2 1093696 1096684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00146 35 543 Carbohydrate Esterase AT1G23200 52.372 0.0 545
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00146 02 1093696 1096684 Tsu02g00146 02 1093696 1096684 ECH