Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00072 ATGCATCCTAACTCAGTAGTATCGTCTCCCCGTTATCATTATCATAATGAGACAACTGATCTCCCGCACGTGCCTGGTACCAAACTCCGACTCTTGTGCAGCTACGGAGGCCACATCATGCCACGTGACAACTCCCTCTACTATGTAGGCGGAGACACTCGCATTGTGGCCGTGGACCGTCACTCATCCTTAACACACCTTTGTTCCCACCTCTCTCGCAATCTCCTTCATGGAAGAAGATCATTCACTCTTAAGTACCATCTTCCCAATGAAGACCTTGACAATCTCATCACTGTTTCTACCGATGAAGACCTCCAAAACATGATCGAAGAGTATGATCGTTTGTCTTCAAACCCTTCCCCCTCCCCTTCTCGACTCAGATTGTTCCTCTTTTTCTCAAAACCAGAAACTGCTGTTTCCATGGACACTCTCCACCATGACTCTAATAATTCGTGGTTCGTGGAAGCTCTCAACAACTCAGGGATTCTCTCTCGCGTTGTTTCTGATTCTGCTGCAGTTGTTGATAATTGTCTCCTCAACCTTGATGATTATGATGCAAGTGCTTCTAGCTGCACCGACGAAAATACTACTAATACTAATGTTAACAAGGAGCATTTAATTGATGTGGATTATTCCGTACCTGTGGACGAGGAGGACAATGTGTTTAATTATTCATTTGATAATCTTCCTCAAATACGAGTTCGCATGGATGAACAGAAGCTTGTTGAGATGGAGCAGCAGCAGGATAACAACATTGACGATGTAAAAGTTGTGAACGCGAAGCAAGATGATGCTTTTCTTGTGCAATCACAGGTCAAAAGTGATCAAAATCAGCAAGAGGAACAAGTAAACAATTCTGCTTACACCTCACCCCAGCAACAACCGGATCAAAATCCGCAGCAACCTGCCACATATCAACATCAATTTGTCTATATTAACCATCCTATAGGTACCGGTCAAATGCCAATATCATCATACTACCCTTATTATGCACCACAGTCACACCAACAACTTAATCAGTTCCCAGTTTATGTGATGCCTATTGGTCTTGGATCTACACAACCATACAACATGGCTTTGCAATCCAATATAGCTGACACAAATGTAGTAGCCTCAACTAGGCCACAAATACCACAAAGTATTGTACCAGAAGTGACTCCAAGTGTTTATAAAGCTCCTGTGGCATCAAATTCTGGTTTTATTCAAATACCATCCAACCAATTTCAGCAGCAATGTATGAATTTGTCTCAAAACATTCACCATCCACTTCCAGCACACCCTATTTATGGTTACGACTATGGTGGAGCTATGCAAGAACAAGTATACTATACACAAACACAACAGCAGCATGCAAATGCAAATCCACCATCTCAGTACCAATCCATGACCCCAGCGGTTGCTGCAGCAGCAATATCAGATGTTTCAAAACAATTTCCTATAGATAACATTCAGCAGCCAAACAAAAACTCACAGCAAGTATGA 1482 0.4244 MHPNSVVSSPRYHYHNETTDLPHVPGTKLRLLCSYGGHIMPRDNSLYYVGGDTRIVAVDRHSSLTHLCSHLSRNLLHGRRSFTLKYHLPNEDLDNLITVSTDEDLQNMIEEYDRLSSNPSPSPSRLRLFLFFSKPETAVSMDTLHHDSNNSWFVEALNNSGILSRVVSDSAAVVDNCLLNLDDYDASASSCTDENTTNTNVNKEHLIDVDYSVPVDEEDNVFNYSFDNLPQIRVRMDEQKLVEMEQQQDNNIDDVKVVNAKQDDAFLVQSQVKSDQNQQEEQVNNSAYTSPQQQPDQNPQQPATYQHQFVYINHPIGTGQMPISSYYPYYAPQSHQQLNQFPVYVMPIGLGSTQPYNMALQSNIADTNVVASTRPQIPQSIVPEVTPSVYKAPVASNSGFIQIPSNQFQQQCMNLSQNIHHPLPAHPIYGYDYGGAMQEQVYYTQTQQQHANANPPSQYQSMTPAVAAAAISDVSKQFPIDNIQQPNKNSQQV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00072 493 MobiDBLite consensus disorder prediction 271 303 - -
Tsu02g00072 493 Gene3D - 47 132 - -
Tsu02g00072 493 Pfam PB1 domain 42 131 IPR000270 GO:0005515
Tsu02g00072 493 SMART PB1_new 41 133 IPR000270 GO:0005515
Tsu02g00072 493 SUPERFAMILY CAD & PB1 domains 43 141 - -
Tsu02g00072 493 PANTHER OS05G0427100 PROTEIN-RELATED 261 486 - -
Tsu02g00072 493 PANTHER OS05G0427100 PROTEIN-RELATED 2 240 - -
Tsu02g00072 493 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 2 240 - -
Tsu02g00072 493 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 261 486 - -
Tsu02g00072 493 CDD PB1_UP2 32 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00072 Tsu-Chr2 451028 452509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00072 20 159 MAP Kinase Kinase Kinase AT5G57610 43.448 2.39e-22 99.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00072 02 451028 452509 Tsu03g03102 03 42783579 42786904 ECH
Tsu01g04839 01 55437814 55440846 Tsu02g00072 02 451028 452509 ECH
Tsu02g00072 02 451028 452509 Tsu02g00072 02 451028 452509 ECH