Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g04936 | ATGGATCAGAAGACAATTGCCATGGCTGCCACTGCCGCCAAAACACTGTGGCCGGCTCGGCCAACTCAGTGGACTCGTGAAGACGTCAAACTTTTCGAGAGAGCTCTAGTTGAGGTGCGGAAGAATTCACTTAACCGTTGGGAGAAGATTGCCGAAAAAGTTCCCAGTAAGTCTGTGGCAGAAGTCAAGGATCACTACGAAGAATTGGTTCGCGATATTTCGGATATTGAACCGGGTCGTGTTGAACTTCCGAACTATCCTGATGATGACTTGCCTATGAGTAGTGGCATTGGAATGCCTAGACAAGGTGatgaagaggagaagaagaagatgaagaagaagaaaggaatACCATGGAGTGAACAAGaacataaGTTGTTTCTTGCTGGGCTTGAGGAATATGGCAGAGGAAAATGGAGACAGATTTCAAGAAACTATGTTGTTACAAGAAATCTAACACAAGTAGCAAGCCATGCTCAAAAATACTTTCTTCATCTTAGCAAGAATGAAGTGAATGAAGAGAGGAAAAGACCAAGTATTCATGACAATACATTGGTAGATAGTAACTTAGCTCCTGTGGTGCCTATTGATCAGAATTGTGTTCCTCTTCCAGGTGGTGTTGGATCACTGCACCAGTCTCAAGTAATGGATTATTTTCCCTCCAGCAGTAGAATGCAAGATCAAATGGGTTCACAAATGCATTATTAG | 708 | 0.4082 | MDQKTIAMAATAAKTLWPARPTQWTREDVKLFERALVEVRKNSLNRWEKIAEKVPSKSVAEVKDHYEELVRDISDIEPGRVELPNYPDDDLPMSSGIGMPRQGDEEEKKKMKKKKGIPWSEQEHKLFLAGLEEYGRGKWRQISRNYVVTRNLTQVASHAQKYFLHLSKNEVNEERKRPSIHDNTLVDSNLAPVVPIDQNCVPLPGGVGSLHQSQVMDYFPSSSRMQDQMGSQMHY | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04936 | 235 | Pfam | Myb-like DNA-binding domain | 118 | 163 | IPR001005 | - | |
| Tsu01g04936 | 235 | Pfam | Myb-like DNA-binding domain | 23 | 67 | IPR001005 | - | |
| Tsu01g04936 | 235 | Gene3D | - | 117 | 168 | - | - | |
| Tsu01g04936 | 235 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 114 | 165 | IPR006447 | GO:0003677 | |
| Tsu01g04936 | 235 | CDD | SANT | 24 | 70 | IPR001005 | - | |
| Tsu01g04936 | 235 | ProSiteProfiles | SANT domain profile. | 119 | 171 | IPR017884 | - | |
| Tsu01g04936 | 235 | ProSiteProfiles | Myb-like domain profile. | 24 | 70 | IPR001005 | - | |
| Tsu01g04936 | 235 | Gene3D | - | 19 | 83 | - | - | |
| Tsu01g04936 | 235 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - | |
| Tsu01g04936 | 235 | SUPERFAMILY | Homeodomain-like | 22 | 77 | IPR009057 | - | |
| Tsu01g04936 | 235 | CDD | SANT | 118 | 163 | IPR001005 | - | |
| Tsu01g04936 | 235 | PANTHER | SYRINGOLIDE-INDUCED PROTEIN 1-3-1B | 19 | 229 | - | - | |
| Tsu01g04936 | 235 | SUPERFAMILY | Homeodomain-like | 112 | 168 | IPR009057 | - | |
| Tsu01g04936 | 235 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 111 | 167 | IPR017930 | - | |
| Tsu01g04936 | 235 | ProSiteProfiles | Myb-like domain profile. | 118 | 163 | IPR001005 | - | |
| Tsu01g04936 | 235 | SMART | sant | 115 | 165 | IPR001005 | - | |
| Tsu01g04936 | 235 | SMART | sant | 20 | 72 | IPR001005 | - | |
| Tsu01g04936 | 235 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 19 | 229 | IPR043363 | - | |
| Tsu01g04936 | 235 | ProSiteProfiles | SANT domain profile. | 19 | 74 | IPR017884 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g04936 | Tsu-Chr1 | 56304243 | 56305034 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Tsu01g04936 | Myb_DNA-binding | 1.2e-09 | CL0123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu01g04936 | 01 | 56304243 | 56305034 | Tsu01g04936 | 01 | 56304243 | 56305034 | ECH |