Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04918 atgggtcttcaaTTTTTCAACTTAATCCTCTTCATCTTATGTGCTTCTCCATTGGCACATTCTAGAAACATACCCCACAATTCCAAAACCACACTACTCAATGTTGCTGATTCCATTCAAAAAACACACCAAGTTCTCAACTTCAAGTTCAACCAAAACAACcttaaacaacaacaacataagaGTTATGTTTCTTCTTTATCATCATCAACACTCTCTCTTCAACTACATTCAAGAGCATCCATTTATAAATCTTCACATGCTGACTACAAGTCACTAACATTATCCAGACTCGACCGTGACTCAGCCCGAGTCAAATCCATTGTGACTCAGTTAGATCCAAATTTCAATGCAGATAAACTTTCTGGACCCATTATCTCCGGAACGAGTCAAGGTAGTGGCGAGTACTTTTCTCGACTCGGAATCGGTGAGCCACCGAGTCAAGCTTACATGGTTCTTGACACTGGTAGTGACATAAGCTGGGTACAATGCGCACCCTGCGCCGATTGTTATCGCCAAGCCGATCCAATTTTCGAGCCGACTTCATCAGCTTCTTACACGCCACTCACTTGTGAAGCCAATCAATGCAAATCGCTTGACCTATCTCAATGCCATAACGGTAACTGTCTCTACGAAGTTTCCTACGGTGACGGCTCTTACACAGTGGGAGACTTCGTTACAGAGACGGTTACAATCGGCGCAACTTCAGTTCAGAACATAGCCATCGGCTGTGGTCATAATAACGAAGGTTTATTTGTCGGCGCAGCTGGCTTACTCGGCTTAGGTGGCGGCCCACTTTCTTTTCCGGCTCAGCTTAATACGACGTCGTTTTCATATTGTCTCGTAGATCGTGATTCTGATTTGGTTTCAACCCTAGAGTTTGATTCTCCGTTTTCTCGTAACGCCGTTACTGCTCCGTTACGGCGTAATCCTCAATTGGATACGTTTTACTATGTTGGACTTGTCGGAATAAGTGTCGGCGGGGAGTTACTTCCGATTCCGGAGACGAGTTTTACGGTTGATGCTACCGGAAGTGGAGGGATTATTGTTGATTCCGGCACGGCGGTGACACGGTTGCAGAGTGACGTGTATGACGTTGTTCGTGATGCGTTTGTGAATGGAACGAAAGATTTACCGACGACGAATGGTGTTTCGTTGTTTGATACTTGTTATGACTTATCGGCGAAGACAAGTGTGGAGGTTCCGACGGTGGCGTTTCATTTTGGGGAAGGGAAAGTGTTGGTGATGCCGGCGAAGAATTACCTGGTACCGGTTGATTCGGTTGGAACATTTTGTTTTGCATTTGCTTCAACGACGTCGTCTTTGGGGATAATTGGGAATATTCAACAGCAAGGGACACGTGTCAGTTTTGATATTGAAAACTCGCTAATTGGATTTAGTCCTAACAGTTGTTAG 1416 0.4393 MGLQFFNLILFILCASPLAHSRNIPHNSKTTLLNVADSIQKTHQVLNFKFNQNNLKQQQHKSYVSSLSSSTLSLQLHSRASIYKSSHADYKSLTLSRLDRDSARVKSIVTQLDPNFNADKLSGPIISGTSQGSGEYFSRLGIGEPPSQAYMVLDTGSDISWVQCAPCADCYRQADPIFEPTSSASYTPLTCEANQCKSLDLSQCHNGNCLYEVSYGDGSYTVGDFVTETVTIGATSVQNIAIGCGHNNEGLFVGAAGLLGLGGGPLSFPAQLNTTSFSYCLVDRDSDLVSTLEFDSPFSRNAVTAPLRRNPQLDTFYYVGLVGISVGGELLPIPETSFTVDATGSGGIIVDSGTAVTRLQSDVYDVVRDAFVNGTKDLPTTNGVSLFDTCYDLSAKTSVEVPTVAFHFGEGKVLVMPAKNYLVPVDSVGTFCFAFASTTSSLGIIGNIQQQGTRVSFDIENSLIGFSPNSC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04918 471 Pfam Xylanase inhibitor N-terminal 136 288 IPR032861 -
Tsu01g04918 471 ProSiteProfiles Peptidase family A1 domain profile. 136 467 IPR033121 -
Tsu01g04918 471 SUPERFAMILY Acid proteases 130 471 IPR021109 -
Tsu01g04918 471 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 471 - -
Tsu01g04918 471 Pfam Xylanase inhibitor C-terminal 317 467 IPR032799 -
Tsu01g04918 471 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 151 162 IPR001969 GO:0004190|GO:0006508
Tsu01g04918 471 PANTHER ASPARTYL PROTEASES 10 471 IPR001461 GO:0004190|GO:0006508
Tsu01g04918 471 Gene3D Acid Proteases 112 293 IPR021109 -
Tsu01g04918 471 Gene3D Acid Proteases 294 471 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04918 Tsu-Chr1 56149272 56151248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04918 126 471 Miscellaneous Gene Families AT1G77480 28.866 2.26e-25 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04918 01 56149272 56151248 Tsu01g04918 01 56149272 56151248 ECH