Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04917 ATGAATTCTCCAACTTCCACATCTTCCTCCTCCGACTTTGTTTCTATAGCCACCGATCAGAGTGCCGCCCGGAGTAGGAGAAGCGGTACCGGCAGTGAAGTGGTGGCGGTGGAACAATCGCGGCGGTGGCATGATGTTTTCTGGTTAGGAATATTTTTGATCCATTTGATTGGACTAGGATTCCTTCTAGGGGTTCTTGGCCTCAATAGGTTTGAGAAAGAGAATAGACTTAACATTGATAAGTATACCCCTGGTATTTCTCGGAATGAAGCTGGTTTGACCGAGACTTACTGGCCACTCTATGCTGTTGCTGGTGGAATTGGGACTTTCCTTGGATGGACTTGGATGTTGTTGTTGGGTTCCCAAGCTACTCAAATGATGAAGGTTACTGTTCACATATTGGCCACTTATCTGGCTGTCATCAGTGTTTTGTGTTTCTGGACTGGCCAGATTTTTTGGGGGGTTGCTTTTGCTGTTGGAGCTGCTCTTCAGTTCTTGTATGTTATATCCGTCATAGACAGACTTCCATTTACAATGTTGGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAATCTTCCTGAGGTGATGAGAGTGTCATATGCATTTATGTTTGCTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAACTTGAGTGATGGAGGACAATGGTGGCTTCTTGTGGTTTTCTCTGTAAGCTTATTTTGGACAGGTGCAGTGCTGTGCAATACTGTGCATGTTATAGTGTCTGGAATGGTGTTTCTTGTTCTTTTCCATGGTGGTAGAGATGCAGCTTCAATTCCCGCTAACTCCTTAATGAAATCATTACAATATGCTTTAACAACATCTTTTGGTAGCATCTGTTATGGCTCATTGTTCACTGCTGCTATTAGGACACTGCGATGGGAGATACGTGGACTTCGGTCAAAGATCGGCAACAATGAGTGTTTGCTTTGctgtgttgattttgttttccatCTTGTGGAGACTCTTGTTcgattttttaacaaatatgcCTACGTTCAGATTGCTGTTAATGGTAAAAGTTTTAACAATTCGGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGGCGTTGAGGCACTTGTGGCATATGATTGTTCAGGTGCTGTCCTGCTAATGGGCACCGTTTTTGGTGGACTAATAACCGGAACTTGCGCTGGTGTATGGGCATGGGTTAAATGGAGTGACAGGGTTATTATGATTGGCTCCACATCCATGCTCATGGGTATGGTTTTGGTTGGATTGGCAATGGTTGTGGTGGAGAGTGCTGTTACATCGATATATATTTGCTACGCAGAAGACCCTTTATTGATTCAGAGATGGGATGCTGATTTTTTCAACCAGATGTCTGAGACACTACATCACCGACTTCAATACAGGAGTGCTCGACCGAGGGACTATCGATTCCATGATGACCCTATACGAGAAAACGCCTCTATTTGA 1488 0.4321 MNSPTSTSSSSDFVSIATDQSAARSRRSGTGSEVVAVEQSRRWHDVFWLGIFLIHLIGLGFLLGVLGLNRFEKENRLNIDKYTPGISRNEAGLTETYWPLYAVAGGIGTFLGWTWMLLLGSQATQMMKVTVHILATYLAVISVLCFWTGQIFWGVAFAVGAALQFLYVISVIDRLPFTMLVLQKAVKMVWNLPEVMRVSYAFMFAVLLWMALWSFGAAGVVASNLSDGGQWWLLVVFSVSLFWTGAVLCNTVHVIVSGMVFLVLFHGGRDAASIPANSLMKSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGLRSKIGNNECLLCCVDFVFHLVETLVRFFNKYAYVQIAVNGKSFNNSARDAWELFQSTGVEALVAYDCSGAVLLMGTVFGGLITGTCAGVWAWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIQRWDADFFNQMSETLHHRLQYRSARPRDYRFHDDPIRENASI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04917 495 Pfam Plasma-membrane choline transporter 156 450 IPR007603 GO:0022857|GO:0055085
Tsu01g04917 495 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 15 490 - -
Tsu01g04917 495 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 15 490 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04917 Tsu-Chr1 56141967 56145232 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04917 01 56141967 56145232 Tsu01g04917 01 56141967 56145232 ECH