Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04916 ATGCAAAACTTCAACACAGTTCAATCAGATTCACCACTCTATTCTCACTCTTCCTTCTTACTTCGGGGAGATGAATCCTTCCCCAATCTATATCCTACGCGTTTCTTTGATCCTCCTCAACTTTCATTTCAACAACACCACCATGCTGTTGATTTAAGTTCTGTGTTTGGTGCAAAGTCTAACAATGTTGCTGTTGATGCAAGTAACTTGCAGTACGGAACATTCAACAATTATAACCTTGGTTCAGCTTCTTCAGCTATGGAAGATAACAGTCAAAAGACTGAAGATACTTCAACAGAAGATAATATTGACACTGATCATAAAAACAACCAATCTTTCTCAAATGTGTCTTGGTGCAATGATGTTGGGAACAAAGCTCTTGTAGATGTTGACTCCAAAGATCAATGTAATAGTACTAAGGATAAAACTGAAGAGCAAAAGACTCTTCGTCGGCTGGTGCAGAATCGCGAGGCTGCAAGGAAAAGTCGGTTAAGGAAAAAGGCATATGTGCAGCAATTGGAGAATAGTCGACTTAGGCTTGCTCAATTAGAGCAAGAGCTTCAACAAGTACATCAGCAGGGTGTATTTGTTGCAAATGGAGTTGCAGCAGATCGTGGTCATTCAGTTGTTGGAAACGGTGCATTAGCATTTGATATGGACTATGCCCGTTGGGTTGACGAACATCAACGATTAATCAATGACATAAGATTAGCTATAAATTCACAAATCGGCGATAATGAACTGCATCTTCTTGTCGATGGTGTCATGACACATTATAATGAGTTATACAAGTTGAAGAGTATAGGTGCAAAGGCTGATGTATTTCACATACTTTCCGGGTTTTGGAAAACACCTGCAGAAAGATGTTTCATGTGGCTTGGTGGATTCCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCACCTTGAGGCATTAACGGATCCACAGTTGATGGCGATCTACAATCTGCAGCATTCTTCTCAACAGGCTGAAGATGCATTATCTCAAGGCATGGAAGCATTGCAACAATCTCTTACAGAAACACTTTCCTCTACCTGCTCCACTGGAGCCGGAAATGTTGCCGAGTACATGGGCCAAATGGCAATTGCAATGACCAAACTTGCTTCACTCGAGACTTTCATTCATCAGGCTGATCTCTTGAGGCAACATACACTGCAACAGTTGAATCGAATTTTGACCGCACGTCAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTTCATTTTGCGAATTCGAGCACTCAATTCATTATGGTTAACATGTCCTAAAGAATACTAG 1299 0.4088 MQNFNTVQSDSPLYSHSSFLLRGDESFPNLYPTRFFDPPQLSFQQHHHAVDLSSVFGAKSNNVAVDASNLQYGTFNNYNLGSASSAMEDNSQKTEDTSTEDNIDTDHKNNQSFSNVSWCNDVGNKALVDVDSKDQCNSTKDKTEEQKTLRRLVQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQQVHQQGVFVANGVAADRGHSVVGNGALAFDMDYARWVDEHQRLINDIRLAINSQIGDNELHLLVDGVMTHYNELYKLKSIGAKADVFHILSGFWKTPAERCFMWLGGFRSSELLKIVRNHLEALTDPQLMAIYNLQHSSQQAEDALSQGMEALQQSLTETLSSTCSTGAGNVAEYMGQMAIAMTKLASLETFIHQADLLRQHTLQQLNRILTARQAARALLVINDFILRIRALNSLWLTCPKEY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04916 432 Pfam Seed dormancy control 232 306 IPR025422 GO:0006351|GO:0043565
Tsu01g04916 432 MobiDBLite consensus disorder prediction 93 107 - -
Tsu01g04916 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 145 189 IPR004827 GO:0003700|GO:0006355
Tsu01g04916 432 Coils Coil 166 193 - -
Tsu01g04916 432 SUPERFAMILY Leucine zipper domain 147 191 IPR046347 GO:0003700|GO:0006355
Tsu01g04916 432 ProSiteProfiles DOG1 domain profile. 214 428 IPR025422 GO:0006351|GO:0043565
Tsu01g04916 432 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 47 431 - -
Tsu01g04916 432 PANTHER TRANSCRIPTION FACTOR TGA9 47 431 - -
Tsu01g04916 432 SMART brlzneu 143 214 IPR004827 GO:0003700|GO:0006355
Tsu01g04916 432 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 150 165 IPR004827 GO:0003700|GO:0006355
Tsu01g04916 432 Gene3D - 147 194 - -
Tsu01g04916 432 Pfam bZIP transcription factor 144 186 IPR004827 GO:0003700|GO:0006355
Tsu01g04916 432 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04916 Tsu-Chr1 56134925 56138770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04916 3 431 bZIP Transcription Factor Family AT1G68640 50.855 1.31e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu01g04916 DOG1 3.5e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04916 01 56134925 56138770 Tsu01g04916 01 56134925 56138770 ECH