Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04904 ATGGAAGAAGTAACTAAGATGAAGGTTTTCGTTAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAAGACACGATTTCCGATGtgaagaaaaatatagaaactGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTGAAGGATGGTACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTTTCAAAGAGTAAGCCTGTGTCTGGTGAAGGGTCTACTGCTTCAACTCCAGCAAAGGCTCCACAGACGAGTGCTGCTCCTACTTCAACCCCCACAGTGTCTGTATCTCAAGCTCCTGCTGCAACTGCGGCAACGCCTGCATCCGTTGCTGCCCCTTCTCCGGCTCCAGCTGCTACTCCGGCACCTATATCTTCAGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCGGCATCCAATCTGGTTGCCGGTAGCAACTTGGAGGGAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATTCGTGCTCTTCGAGCTGCCTTCAACAACCCTGAGAGAGCGGTTGAGTATTTGTATTCAGGTATCCCCGAACAAGCTGAAGCTCCACCAGTGGCCCGAGTTCCTGCAAGTGCACAACCTGCGAATCCTGAAGCTGCAGCTGCAGCTCCACAAGCAGCACAGCCTGCTCCTGTTACCTCAAGTGGACCTAATGCTAATCCTCTGGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCTGGTGCCGGCTCTCTGGATTTTCTACGCAACAGTCAACAATTCCAAGCATTACGTGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCAACTCATGAGATTGATTCGAGATCATCAGGCTGACTTCCTTCGCCTGATAAATGAACCTATGGAAGGTGGCGAAGGGAACCTATTGGGACAGATGGCGGCTGGCATGCCACAATCAGTAACTGTCACTCCCGAGGAGCGCGAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTACTTCGCTTGCAACAAAAACGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTTGACGAACAATGA 1206 0.4834 MEEVTKMKVFVKTLKGTHFEIEVTPQDTISDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPVSGEGSTASTPAKAPQTSAAPTSTPTVSVSQAPAATAATPASVAAPSPAPAATPAPISSATATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPPVARVPASAQPANPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIRDHQADFLRLINEPMEGGEGNLLGQMAAGMPQSVTVTPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04904 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 7 400 - -
Tsu01g04904 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 7 400 - -
Tsu01g04904 401 SUPERFAMILY XPC-binding domain 272 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tsu01g04904 401 PRINTS DNA repair protein Rad23 signature 382 397 IPR004806 GO:0006289
Tsu01g04904 401 PRINTS DNA repair protein Rad23 signature 350 366 IPR004806 GO:0006289
Tsu01g04904 401 PRINTS DNA repair protein Rad23 signature 301 323 IPR004806 GO:0006289
Tsu01g04904 401 PRINTS DNA repair protein Rad23 signature 367 381 IPR004806 GO:0006289
Tsu01g04904 401 MobiDBLite consensus disorder prediction 223 252 - -
Tsu01g04904 401 CDD Ubl_Rad23 7 80 - -
Tsu01g04904 401 Gene3D - 4 85 - -
Tsu01g04904 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 394 IPR015940 -
Tsu01g04904 401 TIGRFAM rad23: UV excision repair protein Rad23 7 399 IPR004806 GO:0006289
Tsu01g04904 401 SUPERFAMILY Ubiquitin-like 7 86 IPR029071 -
Tsu01g04904 401 Pfam UBA/TS-N domain 170 205 IPR015940 -
Tsu01g04904 401 Pfam UBA/TS-N domain 356 391 IPR015940 -
Tsu01g04904 401 MobiDBLite consensus disorder prediction 85 147 - -
Tsu01g04904 401 ProSiteProfiles Ubiquitin domain profile. 7 85 IPR000626 GO:0005515
Tsu01g04904 401 Gene3D - 348 395 - -
Tsu01g04904 401 Pfam Ubiquitin family 9 82 IPR000626 GO:0005515
Tsu01g04904 401 SMART uba_6 167 207 IPR015940 -
Tsu01g04904 401 SMART uba_6 356 393 IPR015940 -
Tsu01g04904 401 SUPERFAMILY UBA-like 164 216 IPR009060 GO:0005515
Tsu01g04904 401 Gene3D - 266 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tsu01g04904 401 SUPERFAMILY UBA-like 336 399 IPR009060 GO:0005515
Tsu01g04904 401 CDD UBA2_RAD23_plant 352 394 - -
Tsu01g04904 401 MobiDBLite consensus disorder prediction 85 122 - -
Tsu01g04904 401 SMART CBM 273 316 IPR006636 -
Tsu01g04904 401 Gene3D - 160 210 - -
Tsu01g04904 401 CDD UBA1_Rad23_plant 161 210 - -
Tsu01g04904 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 208 IPR015940 -
Tsu01g04904 401 Pfam XPC-binding domain 275 330 IPR015360 GO:0003684|GO:0006289|GO:0043161
Tsu01g04904 401 SMART ubq_7 7 81 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04904 Tsu-Chr1 56055099 56059610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04904 7 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 4.47e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04904 01 56055099 56059610 Tsu01g04904 01 56055099 56059610 ECH