Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04896 ATGATGAGTTCTAGAAAATCTAGAGCCAAACCAAGGCCTCAGCCTTTGAAAGAGTCCAAATTGTTGACAAGAAATTTGCGCATAGTTTTTGATGATCCTGATGCAACTGATTCATCCGAAGATGAGTCAAACCAACCAACAAGAATCAGAAGAAGTATCATTGATGTTCCTCTCCCTCCTGTTGTTTCTGCAGTATTATCTCAAAACAGTTGCTCTGAGAAGCCAAAGGTTGtaacaaggaagaagaaaactTGTCTTTCACCACAATCTCAAACCAAGAAGAAGGTtgtttcatcaacaacaacaactgcTGCAGCAACAAGAGGACAATCATCGTCCAGATACCGAGGTGTTCGTATGCGAAAATGGGGGAAATGGGCCGCGGAGATTCGTGATCCTTTCAAAGGTGCTAGAATTTGGTTGGGAACTTACAACACTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAGGCTTCAATTTGAAATGATGGAAGCCGAATTGGCTGCAGGAACACGCCTCAATGGTCGTTCTCGTTCTTCTGCTGCAGCCCGTCCTGCTAATGCTGATGCTGCTAATGCGTCTACGTCGGAGAAATTCTCAACAACTACTGAAGAATCTCATAGCTTATTCTCACATGGATCGCCTTCTTCCGTGCTTGAATTGGATACCGTAGCATCATCCAATTTGGTTGAGAAGGTTGATGTTCCATCAGTCAACAACGgagctgctgctgctgctgaaGACGAAGCGATTGAAATGGTGTCTTGTCAACTGGAAGAGCTAGAAATTCCAGATCTGAGTGTTTTGAACTTGCCTGAGCCACCCGTTGCTGCTGCGGAGAATCCTATTGGGACTGATCCCAATCTTGGTTTTGGATTCGATTTTGATCGGTTTAACATCGATCATTTTGAACTGGGTTATGATGACTTTGATGATGATCTCTGCGACTTAAGGGATCTTCACATTCATGGATTTGATGACAATGTGCCTAGTGAGCTTCCTGATTTTGATTTtactgatgatgatgaatttgctGCTTGGATTGAGGAACCCCTCCAACACAACATGTCTTGTCCCAAAGTTTTGTAG 1092 0.4011 MMSSRKSRAKPRPQPLKESKLLTRNLRIVFDDPDATDSSEDESNQPTRIRRSIIDVPLPPVVSAVLSQNSCSEKPKVVTRKKKTCLSPQSQTKKKVVSSTTTTAAATRGQSSSRYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRLQFEMMEAELAAGTRLNGRSRSSAAARPANADAANASTSEKFSTTTEESHSLFSHGSPSSVLELDTVASSNLVEKVDVPSVNNGAAAAAEDEAIEMVSCQLEELEIPDLSVLNLPEPPVAAAENPIGTDPNLGFGFDFDRFNIDHFELGYDDFDDDLCDLRDLHIHGFDDNVPSELPDFDFTDDDEFAAWIEEPLQHNMSCPKVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04896 363 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 CDD AP2 113 180 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 7 352 - -
Tsu01g04896 363 Gene3D AP2/ERF domain 113 170 IPR036955 GO:0003700|GO:0006355
Tsu01g04896 363 MobiDBLite consensus disorder prediction 83 113 - -
Tsu01g04896 363 MobiDBLite consensus disorder prediction 190 216 - -
Tsu01g04896 363 SMART rav1_2 114 168 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 Coils Coil 147 167 - -
Tsu01g04896 363 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 ProSiteProfiles AP2/ERF domain profile. 114 177 IPR001471 GO:0003700|GO:0006355
Tsu01g04896 363 MobiDBLite consensus disorder prediction 1 51 - -
Tsu01g04896 363 MobiDBLite consensus disorder prediction 82 113 - -
Tsu01g04896 363 SUPERFAMILY DNA-binding domain 113 161 IPR016177 GO:0003677
Tsu01g04896 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 352 - -
Tsu01g04896 363 MobiDBLite consensus disorder prediction 173 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04896 Tsu-Chr1 55987905 55988996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04896 24 360 AP2-EREBP Transcription Factor Family AT1G68550 29.805 1.31e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g04896 AP2 4.3e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04896 01 55987905 55988996 Tsu01g04896 01 55987905 55988996 ECH