Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04894 ATGAGTTGTTCAAGTAAGAAAGTTGCAAACGCAGTTGGAGGCAAAACTGCTAGAGCTTGTGATAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTATGTCAAGCTTGTGACTCTTCAGTTCATTCAGCTAATTCTTTAGCTAGAAGACATGAAAGAGTTCGATTGAAGACCGCGTCGTATAAGTCCACCGGTGGTGACGATGAATTCAATAATTCCGGTCCTTTTTTCGGCTTCACAAAGAAAGCAAGAACGCCGAGACAAGGGAAAAACAAATCATCGCCGAGTAATGAACCGGCgaggaataataataataatccgtTTCATCTTGTTCCGGAGATGGGTTTCGATGAAGTGAATTCACTTTCACATGATGAAAATGAGGAGCAACTTCTTTATAGGGTACCGATTTTCGATCCTTTTGTTGCTGAATTATGTAGTACTAGTCCTCCTTCAGTTGGTTCAAGTGAAGGAGGACTAGGAACTATAACTATTGCTTCTGGTACTTTCGCCCCTGATGCTGAAAACATCAGGAGTGAAAGCAGAAGTGGTGGTAACAATTATGAGATGGAAAGCTTTCACGAGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCCGATGTTGAGAGTTTATTGGGTAGGGGACTAGAAAATGAGTGTATAGGGATGGAAGAGTTAGGATTGATTgatacaaaacatgataagGATGGAGAGTGGGAGTGTATTGGGAAAGTGAAGGAAGAAGGTGAAGAGAACCATGAAGTTGTAGAGGTAGATAATAATGAGATGATGGGAAAAGAATCTtcatttgaattgaattttgattatgatgaatCTCATGAAACATGTGAAGAGGTTAAGGGTAAGGTTGATTTGGATAtagaacaaaatgaaaataataattgtaataagGGGAAGAGGAAAATATCTTTGCAGCTAAACTATGATGCAATAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGTGACAAACCAAATTTTGATGCTGATGAAACCTGGCTTGATTGCATGcaGGGAACTTATGGAACAGAAGTTCATTATCCTTATGGTGAATTTGGTGGATATGGATATAATCCAGTAATGGTAGATGGAGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGAAGATTTGTAAAGAGAGCTTCCTTTGCAGTTCCAACATTTCctttgctaaaataa 1317 0.3667 MSCSSKKVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSTGGDDEFNNSGPFFGFTKKARTPRQGKNKSSPSNEPARNNNNNPFHLVPEMGFDEVNSLSHDENEEQLLYRVPIFDPFVAELCSTSPPSVGSSEGGLGTITIASGTFAPDAENIRSESRSGGNNYEMESFHELLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKHDKDGEWECIGKVKEEGEENHEVVEVDNNEMMGKESSFELNFDYDESHETCEEVKGKVDLDIEQNENNNCNKGKRKISLQLNYDAIIIAWDSQKCPWTNGDKPNFDADETWLDCMQGTYGTEVHYPYGEFGGYGYNPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04894 438 ProSiteProfiles CCT domain profile. 384 426 IPR010402 GO:0005515
Tsu01g04894 438 MobiDBLite consensus disorder prediction 78 115 - -
Tsu01g04894 438 MobiDBLite consensus disorder prediction 95 115 - -
Tsu01g04894 438 Pfam CCT motif 384 426 IPR010402 GO:0005515
Tsu01g04894 438 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 431 - -
Tsu01g04894 438 SMART bboxneu5 15 62 IPR000315 GO:0008270
Tsu01g04894 438 CDD Bbox1_BBX-like 19 62 - -
Tsu01g04894 438 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Tsu01g04894 438 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 431 - -
Tsu01g04894 438 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04894 Tsu-Chr1 55932306 55934449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04894 6 426 C2C2-CO-like Transcription Factor Family AT1G25440 45.662 2.25e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu01g04894 zf-B_box 9.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04894 01 55932306 55934449 Tsu01g04894 01 55932306 55934449 ECH