Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04893 ATGAAATTGAGTTGCAATGGGTGCCGCGTACTTCGCAGAGGATGCAGTGAAGATTGCATCATCAAGCCATGCCTTGAATGGATCATTTCCCCTGAAGCCCAAGGCCATGCCACTCTCTTCCTTGCCAAGTTCTATGGCCGAATTGGCTTGTTCAACCTCCTTGCTAACGCCACTAGTCAAAATGCCCAAGCTGTGTTCAAGTCATTGTTGTACGAGGCTGCAGGTAGATTGGTGAATCCCACACATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAGCCAATGTGAAGCTGCAGTTGAATCTGTGTTGACTGGATCAAAGATTAATGATGTTGCAGCTGTTGATGGTCATACATCATCAGACACAATCACTGCTGAAAATCTTGTTCTTCCAACAACCTCTGGTATACGCCATGTGGCAAGAGGTACCAATGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGTTGGGTCAACTTCCAAATCTAAGCTGCAAGTTGGTTTGGCCGACAAGGCTACACTTTTGAATTCGGTTTTGGAGAATGACAACGTGAAAACTGCTGAGGCTTCATCGATGATTGTGAAAGAGCTGAATGGAACTGTTGAAACTCAAGTGAACTTGGAACTCACTCTTGGCTTCAATTGCCAATCAAGCAATGGCAAAAGAATCATATGA 678 0.4454 MKLSCNGCRVLRRGCSEDCIIKPCLEWIISPEAQGHATLFLAKFYGRIGLFNLLANATSQNAQAVFKSLLYEAAGRLVNPTHGALGLFWTGQWSQCEAAVESVLTGSKINDVAAVDGHTSSDTITAENLVLPTTSGIRHVARGTNVDIKEKTQFKRVGSTSKSKLQVGLADKATLLNSVLENDNVKTAEASSMIVKELNGTVETQVNLELTLGFNCQSSNGKRII 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04893 225 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Tsu01g04893 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 224 - -
Tsu01g04893 225 PANTHER LOB DOMAIN PROTEIN 1 224 - -
Tsu01g04893 225 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04893 Tsu-Chr1 55929009 55930329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04893 1 168 AS2 family AT1G68510 47.059 6.80e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu01g04893 LOB 2.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04893 01 55929009 55930329 Tsu01g04893 01 55929009 55930329 ECH
Tsu01g04893 01 55929009 55930329 Tsu06g02441 06 31262960 31264097 ECH