Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04877 ATGTCCACAACTACAAAGAGAGAATTTAGTAACACTAATGAAGAAAATGAGCTTAGAAGAGGACCATGGACTCTTGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCagGATTGAAGAGGAATGGAAAAAGCTGTAGACTTAGATGGTTGAATTACTTGAAACCTGATATTAAGAGAGGGAATCTTTCTCCTCAAGAACAGTTGTTGATCCTTGAACTTCATTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAACATCTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCGCGCCAACTTAACATTGAATCTGGTAGCAAGAAATTCCTTGATGCTGTTAAGTGTTTTTGGATGCCAAGGCTACTTCAAAAGATGGAACAGAACACTTCACCAATCTCTGATCACTCTTCTATCACAAACATGAATAGTTTTGGCAATTCTTTTGAAGCTTCAACTAGTAATTCAATCTCAACAAGCTTCAATATTCCTTCTATAGATGCTTCAAGTGCAAATCATGTAAATGCTATGTCAACAAGCTTCAATGATCCTTCTTTGGATTTCTTACAATTTTCACAGCCACTTGAAATTTCAGAAAACTCAAAAAGTGATCCAAATGTGTTAGAGAACATTGTTTATAACTGTCCAATTCAAGACAATTACTATATTGATGAAACCAATAACTATGGCTTAGAAGGTCTAAACTTTGATCCAGCTTCTTCAATGGAAACTTGTGACTTTTCACAGTTTGATTTTCAAAGTGGTTGGATGTTAGATAACATGGCTAATAGTACTTTGTGGAACATGGATGCTATGTGA 891 0.3569 MSTTTKREFSNTNEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFLDAVKCFWMPRLLQKMEQNTSPISDHSSITNMNSFGNSFEASTSNSISTSFNIPSIDASSANHVNAMSTSFNDPSLDFLQFSQPLEISENSKSDPNVLENIVYNCPIQDNYYIDETNNYGLEGLNFDPASSMETCDFSQFDFQSGWMLDNMANSTLWNMDAM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04877 296 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Tsu01g04877 296 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Tsu01g04877 296 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Tsu01g04877 296 Gene3D - 77 118 - -
Tsu01g04877 296 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Tsu01g04877 296 SMART sant 19 69 IPR001005 -
Tsu01g04877 296 SMART sant 72 120 IPR001005 -
Tsu01g04877 296 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Tsu01g04877 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Tsu01g04877 296 CDD SANT 77 116 IPR001005 -
Tsu01g04877 296 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 294 - -
Tsu01g04877 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Tsu01g04877 296 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Tsu01g04877 296 CDD SANT 22 67 IPR001005 -
Tsu01g04877 296 Gene3D - 20 72 - -
Tsu01g04877 296 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 294 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04877 Tsu-Chr1 55768397 55769816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04877 15 160 MYB Transcription Factor Family AT1G68320 80.137 1.08e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g04877 Myb_DNA-binding 4.8e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04877 01 55768397 55769816 Tsu01g04877 01 55768397 55769816 ECH