Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04870 ATGGATCAAAGAACAAACACAACTTCTCAAACACGTCTTAAACTCTTTGGTTTCAACGTTCAAGAAGATGAAACCATgcatgataataataataataataataatcttcatgactactcaacaacaacaaccaaaccaacttcttcttcaacttcaacttcTCCATCAAGATCGCCAGATTCCGGTGTCGGTGAAACTTTTCCACCTTCCTCCGGTGAAAGAAAATACGAGTGTCAATATTGTTGTAGAGAATTTGCAAATTCACAAGCACTTGGTGGACACCAAAACGCGcataaaaaagaaagacaacAACTCAAACGTGCTCAGTTACAAGCTAACCGAAACGCCGCCGTTTCGTTTGTTAGAAATCCTATCATCTCCGCCTTTGCATCACCGCCGCATCTATTAGCTCCGCCGGGGTCCATGATGGTTCCATCTTCTAATTCATCTTGGGTTTACGTTCCACCACGATCTGCTCCTCCTCCGTTCCACGTGTCAGTATCACACGGTTGCGTTTTTCCGTCAGCGAACGGAAACGGAAACACGATGAtgagtggtggtggtggtaacaataataatatcgGTGTTACTAGAGGTGTGAAATCTGGGGGTGCAGGGATGTTTCCGTGTGTTGGCGTTGTAGGGGATTCTTCATCGTCTGCAGCATTGTCAACGATGCAGCAGGTACAAGCCCGGGCCCATCATGTCAGAATGGATGGGCCATGTTTGAGTAGGTTCTCAAAAGGTGATAGCGGGCCCAATTTTGATGATGCATTGGGCTTGGATTTACATCTTAGTCTTGCGCCGGCTGCTAATCAATCTTACGGCTCGGCTCAGTTTGGTTATTCTAGATGCTCTCCTTAG 864 0.3993 MDQRTNTTSQTRLKLFGFNVQEDETMHDNNNNNNNLHDYSTTTTKPTSSSTSTSPSRSPDSGVGETFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRNAAVSFVRNPIISAFASPPHLLAPPGSMMVPSSNSSWVYVPPRSAPPPFHVSVSHGCVFPSANGNGNTMMSGGGGNNNNIGVTRGVKSGGAGMFPCVGVVGDSSSSAALSTMQQVQARAHHVRMDGPCLSRFSKGDSGPNFDDALGLDLHLSLAPAANQSYGSAQFGYSRCSP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04870 287 MobiDBLite consensus disorder prediction 24 71 - -
Tsu01g04870 287 PANTHER ZINC FINGER PROTEIN 5 4 271 IPR044299 GO:0010090
Tsu01g04870 287 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Tsu01g04870 287 Gene3D Classic Zinc Finger 65 123 - -
Tsu01g04870 287 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Tsu01g04870 287 PANTHER ZINC FINGER PROTEIN GIS3 4 271 - -
Tsu01g04870 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Tsu01g04870 287 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04870 Tsu-Chr1 55707496 55708359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04870 5 272 C2H2 Transcription Factor Family AT1G68360 42.708 2.82e-50 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04870 01 55707496 55708359 Tsu01g04870 01 55707496 55708359 ECH