Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04866 ATGGCTTCAGCACTCTCTCCctacattcttcttcttttcttttcccaTTTTCTCCTCATTGTTCATTCTTCCACAAACCCAGATTTAGAATCTCTTATATCTTTCAAAACACTTTCAGACCCATCAAAAAAGCTCACAACTTGGAAAACCGGAACTGACCCATGTACTTGGACCGGCGTTTCATGCGTCAAAAACCGAGTCACTCGACTCATTCTCGAAAATCTCGACCTTCAAGGCTCCATTGAACCGTTAACTTCTCTAACTCAGCTCCGAGTTTTGAGTCTCAAAGGAAACCGCTTCTCCGGTTCAGTTCCGAGTCTCTCCAGCTtcacttctcttaagcttctctTCTTATCTAACAACCGTTTCTCCGGTGAGTTTCCGTCGACGGTGACGTCACTTTTCCGTCTCTACCGTCTCGATCTGTCAAGTAACAACTTCTCCGGCGAGATTCCGGCGACGGTCAACCGTTTGACTCACCTCCTCACTCTTCGTCTTAACGATAATCAGTTCTCTGGTCTCATTCCTGAACTTCACCTTCCTAGTTTACAAGACTTCAACGTCTCCGGGAATGTTCTCTCCGGCGAGATACCGGAAACCTTATCGGGTTTCTCCGGTTCATCTTTCGGGGAAAACCCGTTTCTTTGTGGTGCTCCGTTGAAGAAATGTGAAGCGGAACCGAACAAACCGGGTTCCGAAGGTGCCATTGCTTCACCATTGGTACCAAGTAATAGAATTCCAACAGTTTCATCTTCACCAAGCACAATgccaacaacaacaccaacaacaaaCGTTAAAAGCCATGAAAAAAGAGCTTCTAAAATGAGTCCTATAGTTTTAATAGCTATTATAGTTGGTGATGTTTTTGTTCTTGGAATAGTGTGTTTACTTCTTTATTGCTATTTTTGGAGAAACTATTCTTCAAAATCAAAGGAAGAAAAAGGGTTGAAACTATTTGAGAGTGAAAAGATAGTGTATTCATCAAGTCCGTATCCTACACAAGGAGGGTTTGAGAGGGGTAGAATGGTATTTTTTGAAGGAGAGAAGAGATTTGAACTTGAAGATTTGTTACGTGCTTCTGCTGAAATGCTTGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTTCTTGATGATGGAAATGTTGTTGCTGTCAAGAGGTTGAAAGATGCACAGATTGCAGGGAAGAGAGAATTTGAACAGCATATGGAAGTTCTTGGAAGGATTAGGCATCCAAATGTTGTTAGTTTAAGGGCTTATTATTTTGCAAGAGAAGAGAAGTTATTAGTATATGATTACATGCCTAATGCAACTTTGTTCTGGCTTCTTCATGGAAACAGAGGACCAGGAAGAACCCCACTGGATTGGACCACAAGGCTCAAGATAGCAGCTGGAGCTGCTAAAGGAGTAACTTTCATTCATAACTCGTGCAAATCCCTTAAACTCACTCATGGTAACATTAAATCCACCAACATACTCCTTGACAAGCAAGGAAATGCACGAGTATCGGATTTTGGGCTTTCAATTTTCAACGGTCCAAGCCCATCAGGAGCTGGTAGCAGACCAAATGGCTACCGTGCTCCTGAGGTTTTGGACGGTCGAAAACAGTCCCAAAAATCTGATGTGTACTCTTTCGGTGTTCTGTTGCTAGAGATGCTGACAGGAAAGTGTCCGTCTGCTGCGGAGAGTGGTGGAAGTGGTTATGTTGGGGGTGTGGTTGATCTTCCTAGGTGGGTGCAATCAGTTGTTAGAGAAGAATGGACTGCTGAAGTTTTTGATTTGGAGTTGATGAGGTATAAGGAtattgaagaagaaatggtTGGGTTGCTTCAGATTGCTATGTCTTGTACTGCTGCTTCACCTGATCAACGGCCAAGGATGTCACACGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAGGTGTCTCCCTGTCATGACACGGTGGAATCTGTCTCTGATTCACCTTCATTGTCTGAAGATGCCTGTGCTGGTACTGTTAGTCAGTAA 2010 0.4174 MASALSPYILLLFFSHFLLIVHSSTNPDLESLISFKTLSDPSKKLTTWKTGTDPCTWTGVSCVKNRVTRLILENLDLQGSIEPLTSLTQLRVLSLKGNRFSGSVPSLSSFTSLKLLFLSNNRFSGEFPSTVTSLFRLYRLDLSSNNFSGEIPATVNRLTHLLTLRLNDNQFSGLIPELHLPSLQDFNVSGNVLSGEIPETLSGFSGSSFGENPFLCGAPLKKCEAEPNKPGSEGAIASPLVPSNRIPTVSSSPSTMPTTTPTTNVKSHEKRASKMSPIVLIAIIVGDVFVLGIVCLLLYCYFWRNYSSKSKEEKGLKLFESEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAKGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNGPSPSGAGSRPNGYRAPEVLDGRKQSQKSDVYSFGVLLLEMLTGKCPSAAESGGSGYVGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAASPDQRPRMSHVVKMIEDLRGVEVSPCHDTVESVSDSPSLSEDACAGTVSQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04866 669 MobiDBLite consensus disorder prediction 227 269 - -
Tsu01g04866 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 652 - -
Tsu01g04866 669 Gene3D Ribonuclease Inhibitor 21 85 IPR032675 -
Tsu01g04866 669 Gene3D Ribonuclease Inhibitor 86 230 IPR032675 -
Tsu01g04866 669 SUPERFAMILY Protein kinase-like (PK-like) 362 634 IPR011009 -
Tsu01g04866 669 CDD STKc_IRAK 364 637 - -
Tsu01g04866 669 MobiDBLite consensus disorder prediction 648 669 - -
Tsu01g04866 669 MobiDBLite consensus disorder prediction 243 266 - -
Tsu01g04866 669 Pfam Protein kinase domain 362 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04866 669 ProSiteProfiles Protein kinase domain profile. 358 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04866 669 Gene3D Transferase(Phosphotransferase) domain 1 434 652 - -
Tsu01g04866 669 ProSitePatterns Protein kinases ATP-binding region signature. 364 396 IPR017441 GO:0005524
Tsu01g04866 669 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Tsu01g04866 669 PANTHER - 22 652 - -
Tsu01g04866 669 MobiDBLite consensus disorder prediction 645 669 - -
Tsu01g04866 669 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Tsu01g04866 669 SUPERFAMILY L domain-like 35 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04866 Tsu-Chr1 55675267 55678763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04866 28 669 Receptor kinase-like Gene Family AT1G68400 66.261 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu01g04866 Pkinase 2.1e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04866 01 55675267 55678763 Tsu01g04866 01 55675267 55678763 ECH