Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04862 ATGACCTTAGTTTACAAATTTATGTTCCTTTTGTTTTCACACCTCATGATGCTACTTGTGTTGGTGGGTGGAAATAAGAGTAAGTACCAAAGAGATTGTCCAGCTTCATTTAGTTGGAGTTGCGGATATCTTGGAAATATCAGTTTCCCTTTCACTACAACTGAACGCCCGGACTGCGGCTTATTGCCAATACACAATTGTGGTGATGCTCCACTGACGCCCAAAATGATCCAATTTCAGGATAAAGGGAAACAGTTTGAGTTGAGGGTTGAATATATAAGTCCTCTTGAGTATCACGGTGGTAATGCTACTTGTACTTCTGTTTTTAGAGACAAGAATCTCTACAAACTGCTGCAAAACAAAAGTTGTGAAGCTTTCAGATATAATTATACTTTTCCTCCCACCTCTCACTTTGTTTCTTTTCATATGGAAACTCATGTCACCTTGTTCATGTGCAACCGTACTCTCCATGTCAACCCTCCATCATATATGCATAAGTATACAAAGTGTCCTCTTTATGATCTCTACTACCAGCCTTACCACTATGTTGATAATGTATCTCGGTGTGCTTTTACAGCTTGTACAAATGTCCGGCTTCTAATTAAAGACCTCACCGACAATGACGACCCTTTTACGTTCATAACTGCTGATATCCCAACTCAAGTAATCATAACAAAGGAATGTGCAAATTGTCACTACAACCAAAGTGGACGGTGCAAGCTTGGCAGCAACGGGAGGTTTTATTGCGCTGATGTGGTCTCGGTGGTTGGAGTTGCATTTGCCTTGCTGATTGTCTTAGTTTGCTGCTTTAGGAAAAAGATCTTCCCTCCTGCATTTCCTTTGTTCGGGAAGGACAATCCGACACATCAAATTATTGAGAAATTTTTGAAGGAACATGGACCTCTTCCAGCTGCTAGGTACAATTATTCAGATATCAAGAAAATAACAAActctttcaaaaacaaattaggTCAAGGAGGGTACGGAAGTGTATACAAAGGAAAGTTACACGATGAGCGTATGGTGGCAGTGAAGGTTTTAAGCGAATCAAAAGGTGATGGTGAAGATTTCATTAATGAAGTTGCAAGTATCAGTAGAACTTCGCATGTCAACGTTGTTAGACTTTTGGGATTTTGTTTGGATGGTTCTAAAAAGGCACTAATATACGAATTTATGCCTAATGGATCTCTTGAAAAGTTTATATACGAAGAGAAAAATCCATTGAAGGAGGAACGTCAATTGGATTGCAAAACATTGTATGATATTGCAGTTGGCGTTGCTCAAGGGTTAGAATACTTGCACAAAGGTTGCAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATATTAATAGACGAtgatttttgtccaaaaatttCCGACTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCATGAGGGGAACACCAGGATATATTGCTCCAGAATTATTCTCCAGAAATTTCGGTGGAGTGTCACATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTcaaaaaaagaatatcaaaGTTGAAGTTGATTGTTCTAGCGAGTTATATTTTCCACACTGGATTTACAAGCATCTTGAATTGAATCAGGATCTTGGACTCAAGTGTATTAAGaatgaaattgatgaagaaatggtaagaaaaatgataGTGGTGAGTTTATGGTGCATACAAACCGACCCTTCGCATCGACCTGCAATGCATAAAGTGGTGGAAATGCTGGAAGGGAGTCTTCAAGTGTTGGAAATACCACCCAAACCCTTTCTGTCTTCTCCTTCAACATCTCCAATCCATTTATCATCTGAAATATTGTAA 1869 0.3708 MTLVYKFMFLLFSHLMMLLVLVGGNKSKYQRDCPASFSWSCGYLGNISFPFTTTERPDCGLLPIHNCGDAPLTPKMIQFQDKGKQFELRVEYISPLEYHGGNATCTSVFRDKNLYKLLQNKSCEAFRYNYTFPPTSHFVSFHMETHVTLFMCNRTLHVNPPSYMHKYTKCPLYDLYYQPYHYVDNVSRCAFTACTNVRLLIKDLTDNDDPFTFITADIPTQVIITKECANCHYNQSGRCKLGSNGRFYCADVVSVVGVAFALLIVLVCCFRKKIFPPAFPLFGKDNPTHQIIEKFLKEHGPLPAARYNYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERMVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPLKEERQLDCKTLYDIAVGVAQGLEYLHKGCNTRILHFDIKPHNILIDDDFCPKISDFGLAKICPRKESIVSIFGMRGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQKKNIKVEVDCSSELYFPHWIYKHLELNQDLGLKCIKNEIDEEMVRKMIVVSLWCIQTDPSHRPAMHKVVEMLEGSLQVLEIPPKPFLSSPSTSPIHLSSEIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04862 622 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Tsu01g04862 622 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 620 - -
Tsu01g04862 622 SUPERFAMILY Protein kinase-like (PK-like) 301 593 IPR011009 -
Tsu01g04862 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Tsu01g04862 622 ProSiteProfiles Protein kinase domain profile. 317 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04862 622 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 620 IPR045874 GO:0004672
Tsu01g04862 622 SMART serkin_6 317 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04862 622 Pfam Protein kinase domain 320 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04862 622 Gene3D Phosphorylase Kinase; domain 1 295 391 - -
Tsu01g04862 622 Gene3D Transferase(Phosphotransferase) domain 1 392 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04862 Tsu-Chr1 55625219 55656649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04862 4 622 Receptor kinase-like Gene Family AT5G38260 39.204 8.27e-127 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g04862 Pkinase 3.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04862 01 55625219 55656649 Tsu01g04862 01 55625219 55656649 ECH