Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04857 ATGGCTCTACTTCATGTAGTTCATCATAGATTCCTTTTGTTATCTCATTTAACTGTGCTGCTACTTCTACTTGTCTTACCTAGTAAAGGAAATGGACACAGTGATGATTGTCCAGAATCATTTGATTGTGGAAATCTTGGGCTGATTAAATATCCTTTTACCACAGTTGGATTCTCAAACTGTGGTGCATTGGCAATTCAAGGTTGTGATGATACCAACAAAACTGCAACCAAGACCATCCAATTAACCAATGGAGGAAGACACTTTCAAGTTACAAACATTGTTAATGACTGGCGCAAGGGCAACCCTATTTCCATAATTGACCAGAATTTTACCAACCTTTTGGAGAAAAATGCTTGTCAGGCTTTCAGCTATAATATTACCCTCCCTCCTTCATCTCCTTTTGGAATATTTTATATGAAAGACAATATAACCGCTTTCAAATGCAACCACCCCAAAAATTTATCCTTCAACCCTCCaaattatttcttcaaaaatagttcTTGTCGTCACTATGATTTTTACTTCGGCAATTCAATATATGATGATGAGTCTAACCACTCTTTCAAGCTATGTTCGATGTTTCATCTTCCCGTCATTGAATCAGGCTTTGCACTTTCCAGTAACCCATTTccatttttagcttatgaaactACCTTTCAGTTCCAATCTTCAGATTACTGTCTGCAGTGTTACCATGATAAAAAAGGTCATTGTCGTGCTCACATTGACGGACAGATTTATTGCGCAAGTTTCTGTCAATCATCAAAGtcattaaaattaattgttacAGGAGTCGGTGTTGGACCATGGATCATAGTTGGATTCTTCGTCACATTATGGTATTGCAAACGAAAATATGACCCTGCACACATCCAACTCCAACCAAGCAACAACACTTATGTTGATCCTCATCCAAATCGTGAAATGGAGTCAAACAAACTCTTCTTTGGGGTACCTGTCTTCTCCTATGAAGAGCTTCAACAAGCAACAAACAATTTTGACCACACTAGAAAGCTAGGAGATGGAGGTTTTGGCACTGTTTACTATGGAAAACTCAAAGATGGAAGGGAGGTTGCTGTGAAACACTTATTTGATCACAATTATAGGAGAGTAGAACAGTTTgtgaatgaaattgaaatacTGGCTCGCTTGCGCCACAGGAATCTAGCGTCCCTCTATGGTTGCACTTCACGTTACAGCCGCGAGCTGCTGCTTGTATATGAATACATTCCAAATGGAACTGTTGCTAGCCATCTCCATGGCAATTTAGCTAGAGCTGGTTTGCTGACATGGCCTATTCGAATGCAAATCGCAATAGAAACTGCTTCTGCATTGGCCTATCTGCATGCTTCCGACATCATTCACCGTGATGTCAAAACCAACAACATTCTACTTGACATTAATTTTTCTGTTAAGGTAGCAGATTTTGGACTATCGAGGTTGTTCCCCAACAATGCCAGCCATGTCTCGACAGCTCCACAAGGAAGTCCAGGTTATCTAGATCCGGAATATTTCCAACTCTACAAGCTCTCAGTGAAGAGTGATGTGTATAGTTTTGGCGTTGTTCTTATTGAGCTAATATCATCTATGACAGCAATTGATGCTGCCAGAGAAGGAGAGGAAATTAACTTAGCAAATTTAGCAGCTAAGAAGATAAGAAATGACGAAGTTAGCGAGCTGGTTGACCCATCACTTGGTTTTGAATCAGACAGTGAAGTTAAAAGGATGGTAAATTCAGTGGCAGAACTGGCTTTTCAATGTGTGCTAGGAGACATGGAATTAAGACCTTCCATGGATCAAGTTCTGCAAGAACTCAAGAAAATTGATGGTAGGAATTTTGAGTTTGATCATCTAGAGAAAGTAGATGATTCTGTTGGTTCCTTGCGGTCCGAAGAAGTACATCTACCAATATTTAGAACTTCTATTGATAAGAAGCAagaatcatcatcttcaccaaAGCCATTGACTGATAAATGGGAAAGTAAATCTAATACGCCCAATGCCGGTGGTTAA 2016 0.381 MALLHVVHHRFLLLSHLTVLLLLLVLPSKGNGHSDDCPESFDCGNLGLIKYPFTTVGFSNCGALAIQGCDDTNKTATKTIQLTNGGRHFQVTNIVNDWRKGNPISIIDQNFTNLLEKNACQAFSYNITLPPSSPFGIFYMKDNITAFKCNHPKNLSFNPPNYFFKNSSCRHYDFYFGNSIYDDESNHSFKLCSMFHLPVIESGFALSSNPFPFLAYETTFQFQSSDYCLQCYHDKKGHCRAHIDGQIYCASFCQSSKSLKLIVTGVGVGPWIIVGFFVTLWYCKRKYDPAHIQLQPSNNTYVDPHPNREMESNKLFFGVPVFSYEELQQATNNFDHTRKLGDGGFGTVYYGKLKDGREVAVKHLFDHNYRRVEQFVNEIEILARLRHRNLASLYGCTSRYSRELLLVYEYIPNGTVASHLHGNLARAGLLTWPIRMQIAIETASALAYLHASDIIHRDVKTNNILLDINFSVKVADFGLSRLFPNNASHVSTAPQGSPGYLDPEYFQLYKLSVKSDVYSFGVVLIELISSMTAIDAAREGEEINLANLAAKKIRNDEVSELVDPSLGFESDSEVKRMVNSVAELAFQCVLGDMELRPSMDQVLQELKKIDGRNFEFDHLEKVDDSVGSLRSEEVHLPIFRTSIDKKQESSSSPKPLTDKWESKSNTPNAGG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04857 671 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Tsu01g04857 671 SUPERFAMILY Protein kinase-like (PK-like) 311 606 IPR011009 -
Tsu01g04857 671 SMART serkin_6 334 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04857 671 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 669 IPR044652 -
Tsu01g04857 671 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 23 669 - -
Tsu01g04857 671 Gene3D Phosphorylase Kinase; domain 1 306 410 - -
Tsu01g04857 671 MobiDBLite consensus disorder prediction 643 671 - -
Tsu01g04857 671 ProSiteProfiles Protein kinase domain profile. 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04857 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Tsu01g04857 671 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Tsu01g04857 671 MobiDBLite consensus disorder prediction 641 671 - -
Tsu01g04857 671 Pfam Protein tyrosine and serine/threonine kinase 337 606 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04857 Tsu-Chr1 55597421 55600485 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04857 39 671 Receptor kinase-like Gene Family AT1G25390 42.523 1.13e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu01g04857 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04857 01 55597421 55600485 Tsu01g04857 01 55597421 55600485 ECH