Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04855 ATGACCACTCTTTTCATTTTCAAGTCATTAATATTCTCCCAGTTTTTGCTTGTTTCAGGTCAAGATGGAAGAAGATGTCCACACTCTTTTAGTTGCGGAGATCTTGGCCAAATTACCTTCCCTTTCACAGTCACAGAAAGCCCCCACTGTGGCATATTGGCCATAAGTGGTTgtgataataaaaatatatctgCTCCCAAAACCATCCAACTAGGCAAGACGCCATCAAAACAGTTTATTCCTGTTTCATCTGTGGATGGTGATACCATCGCGGTCACTGATGAAGCTCAACGAAAGAATTTGTTATCCAAAAAATGCCAAGCCTTTCACAATTATTCTCTTCCTCCCACTTCTCCTTTAGCTTCTTTCTacatcaaatataatataactatGTTCAAATGCAATCACTCCCTTAGTGTCGTCCCTCCCAAATCATTTGGTAAATATACAAACTGTTCCGGTTATAATATCTATTATGACATTCAAAAAACTTTGAAACCTCCTGGTTTCAAAGTACCAAGCTCTTTGGCAAAGTGTACAATGTTTCACGTTGCAATAAGAGACATCCCTACTTCTGaccccttttattttctatctgcTGATACCGCAATTGAAGTACAATTATCTCATGATTGCAATAAATGTATTCGCCATCGAGGAGGCCGATGCCAACTTGACATCCACGGAAAGTTCCATTGTGCCCAAGGCATTGCACTCCTTGTTGTCATTATTATAACTGGTTTGCTGATTATATGGCGCTGCAAACTACGCGTTCCTGAGTTCTACTCAAAGAAATACACAGAGAGTGACAGTGTCTACCATGGGGTACCAGTCTTTACCTTTAAGGATCTTGAAgtagcaacaaaaaaatttgacaGTTCAAGAGAACTTGGAGAAGGAGGATTTGGAACTGTTTATTATGGAAAACTCAAAGATGGACGTGAAGTTGCTGTGAAGCGCCTATATCAGCACAACTTTAAACGAGTTGAACAGTTCATGAATGAAATCAATATCCTCACTCGCTTGCGCCACAGAAATCTAGTGACTCTCTATGGCTGCACTTCACATCAAAGTCATGAGCTATTGCTTGTTTATGAATACATTTCAAATGGAACTGTTGCCAGTCATCTGCGTCGCGAGTCTGGTTTTTTGCCGTGGCATATCCGAATGAAAGTTGCATTAGAGACTGCTACTGCTCTGGCTTATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACCTTTTGCATTAAAGTTGCAGATTTTGGACTGTCAAAACTGTTCCCAAATGACGTCACACACGTCTCCACAGCTCCACAAGGAACTCCGGGCTATGTGGATCCAGAATATCATCAATGCTACAGGCTTACAAGCAAGAGTGATGTTTACAGCTTCGGGGTTGTGCTTGTTGAGCTGATCTCATCTATGCCAGCAGTTGATATGAGCAGAGATAAGGATGAGATAAACTTGGCAAACCTAGCAGTAAGGAAAATTCAAAAAAGTGCAATCCATGAGTTGGTGGATCCTTCCCTTGGTTTTGAGTCAGATAATGATGTTAAAAGGAAAATAGTTTCAATAGCAGAATTGGCTTTTCAGTGTTTGCAACGGGATAAGGAATTAAGGCCTTCAATGGATGAGGTTTTGGAGGTGCTAAGAAGAATTGATAGTGGGAGTGTGAGCGGTAGGGATGAGTTTGGACATGTAGAGGAAGTAATAGATGGTGGACCAAGGATATCATGTATCGATGTACGTTCACTGTCGCCATCTTCACCCGACCATGTTGAGGTGAAACTGTTGAAGAATAAGAAGTTAACACCATCTCCTAAGTCTATGACAGATAAATGGGATAGTGAATCCACTACTTCTAATGTCAGTGGTCAATCGGCAAGCCGAATGTAA 1926 0.3967 MTTLFIFKSLIFSQFLLVSGQDGRRCPHSFSCGDLGQITFPFTVTESPHCGILAISGCDNKNISAPKTIQLGKTPSKQFIPVSSVDGDTIAVTDEAQRKNLLSKKCQAFHNYSLPPTSPLASFYIKYNITMFKCNHSLSVVPPKSFGKYTNCSGYNIYYDIQKTLKPPGFKVPSSLAKCTMFHVAIRDIPTSDPFYFLSADTAIEVQLSHDCNKCIRHRGGRCQLDIHGKFHCAQGIALLVVIIITGLLIIWRCKLRVPEFYSKKYTESDSVYHGVPVFTFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEINILTRLRHRNLVTLYGCTSHQSHELLLVYEYISNGTVASHLRRESGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYVDPEYHQCYRLTSKSDVYSFGVVLVELISSMPAVDMSRDKDEINLANLAVRKIQKSAIHELVDPSLGFESDNDVKRKIVSIAELAFQCLQRDKELRPSMDEVLEVLRRIDSGSVSGRDEFGHVEEVIDGGPRISCIDVRSLSPSSPDHVEVKLLKNKKLTPSPKSMTDKWDSESTTSNVSGQSASRM 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04855 641 Gene3D Transferase(Phosphotransferase) domain 1 368 575 - -
Tsu01g04855 641 SMART serkin_6 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04855 641 MobiDBLite consensus disorder prediction 611 641 - -
Tsu01g04855 641 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Tsu01g04855 641 SUPERFAMILY Protein kinase-like (PK-like) 272 561 IPR011009 -
Tsu01g04855 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Tsu01g04855 641 MobiDBLite consensus disorder prediction 614 641 - -
Tsu01g04855 641 ProSiteProfiles Protein kinase domain profile. 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04855 641 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 641 - -
Tsu01g04855 641 Gene3D Phosphorylase Kinase; domain 1 262 367 - -
Tsu01g04855 641 Pfam Protein kinase domain 292 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04855 641 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 641 IPR044652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04855 Tsu-Chr1 55582246 55584944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04855 30 635 Receptor kinase-like Gene Family AT1G25390 44.914 8.17e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu01g04855 Pkinase 3.8e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04855 01 55582246 55584944 Tsu01g04855 01 55582246 55584944 ECH