Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04854 ATGACTCCGTTATATTTTTTCTGCTTCCTCTTGTATTGTCACTTCGCGCTGATTTTATCAGCAGGGCATGGAAGCGGGTACAAATATAACTGTTCACGCTCATTCAATTGTGGAGTTCGTGGGACTTTACGTTACCCTTTCACCAAGGCAGAACAACCAGACTGTGGTTTCATACTCATACATGGCTGTGATGCCAGTTATTATTCACCCAAAAACATCCAACTGGAGAAGAATGCAAAAACCATAGAGCTAACTAGTGTCATTGACGACCAGCATACCATTACAATTTCTGATCAAGATTTTTACAAGCGACTACAGAATAATGTTTGTGATGCTTTGAACCACAACTACACTCTTCCTCCCGCTTctccttttgtttctttttatatagATTATAACGTAACTCTCTTCCGATGCAATCATAGCCGCAATATCAACCCCCCTGCAAACTATTTTCGATTCAAGTGTCCTAACTACGTTATCTATTATGACAGTAATCCATATCCCAAAGTTACTACAGAGAAGGCACATAGCTTTTTCCCATCCTGCTCGTTACTTCAGTTTCCAACTAAAGATTTGACTGAtaccaaaaacattttatcattTGTATCTGGTCAGATGGTTGTTAAAATAGTATTATCTGCTGATTGTGATGAGTGCTGCAACCATAGAGGAGGCCAATGTAGGCTTGATGCCAACAAAATGTTCTACTGTGACAATGCTTTTGCTGCAGAGCCGAAGAAAAAgatgagaaaatattttaagcTGCTACTTGGACTTGGAATAGGTTTAAGCATTACATTGTCTGCACTGGGTATTCTTATAATTCGATGCCGCTCCGGAAGAAAGCATGTTCCATCGGACCTCCAGAATCAATCGAGAAGCACATATACTGATGCGATTGATTCCTACCATAATCCAGGTCCAGAAAATGGCACTGTCTACTTTAAAATCCCTCTGTTCTCCTACAAGGAGCTAGAAGAAGCTACAAATAATTTCCACCAGGCCAACCAAATTGGAAACGGAGGCTTTGGAATAGTTTACTATGGAAAACTGCGAGATGGACGGGAAGTTGCTATTAAGCGCCCATATGAACATAACTGGAGGCGAGTAGAACAGTTCACAAATGAAATTGAGATCCTTGCTCGCACACGCCACACCAATCTTGTATCCCTCTATGGCTGTACTTCATATCACAGTGATGAACTACTGCTTGTGTACGAACATGTTCCAAATCACACCGTTGCTTGTCATCTCCATGGTGATTTAGCAAGAACAGGCACACTTCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCAAGTTCATTGGCTTATCTGCATGCTTCTGGCATCATCCACCGTGATgtgaaaaccaaaaacattCTCCTTACAAACAACTTCAGTGTTAAAGTTGCAGATTTTGGTCTTTCAAGGCTATTCCCCCTCGATATCACCCATGCTTCCACGGCACCACAAGGGACACCGGGTTACGTTGATCCAGAATATCATCAATGCTACCAGCTTACTAGCAAGAGTGATGTATACAGTTTTGGTGTTGTGCTCATTGAGCTAATATCATCTAAGCTTGCTGTTGATATGAACAGGCATAAGGATGAGATTAACTTGTCAAACCTGGCTTTAAAGAAGATCCAAGAGGGTGCACTTACTGAGTTGGTGGATCCTTATCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATAGTTTCAGTGGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAGCGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGTTGATGAGAATTGAAAGTGGAAAGGATGTGCCTGAGCATATAGTTGAAGATGAGCGTCCACCCTCTCCACTTTCACCAGATGGGGATGAGATTGAGATTGGATTATTCCAAAAAATGATGCCACAGCCATCAGTATCACCTAAAGCTGTGGTTGATAAATGGAATAGTCAATCTACTTCGTCTAATACCAGTGGCCATTAA 2013 0.4024 MTPLYFFCFLLYCHFALILSAGHGSGYKYNCSRSFNCGVRGTLRYPFTKAEQPDCGFILIHGCDASYYSPKNIQLEKNAKTIELTSVIDDQHTITISDQDFYKRLQNNVCDALNHNYTLPPASPFVSFYIDYNVTLFRCNHSRNINPPANYFRFKCPNYVIYYDSNPYPKVTTEKAHSFFPSCSLLQFPTKDLTDTKNILSFVSGQMVVKIVLSADCDECCNHRGGQCRLDANKMFYCDNAFAAEPKKKMRKYFKLLLGLGIGLSITLSALGILIIRCRSGRKHVPSDLQNQSRSTYTDAIDSYHNPGPENGTVYFKIPLFSYKELEEATNNFHQANQIGNGGFGIVYYGKLRDGREVAIKRPYEHNWRRVEQFTNEIEILARTRHTNLVSLYGCTSYHSDELLLVYEHVPNHTVACHLHGDLARTGTLPWHIRMKIAIETASSLAYLHASGIIHRDVKTKNILLTNNFSVKVADFGLSRLFPLDITHASTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLIELISSKLAVDMNRHKDEINLSNLALKKIQEGALTELVDPYLGFDSDNEVKRMIVSVAELAFQCLQRESELRPSMDEVLKVLMRIESGKDVPEHIVEDERPPSPLSPDGDEIEIGLFQKMMPQPSVSPKAVVDKWNSQSTSSNTSGH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04854 670 MobiDBLite consensus disorder prediction 653 670 - -
Tsu01g04854 670 Pfam Protein kinase domain 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04854 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Tsu01g04854 670 Gene3D Phosphorylase Kinase; domain 1 309 409 - -
Tsu01g04854 670 ProSiteProfiles Protein kinase domain profile. 333 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04854 670 Gene3D Transferase(Phosphotransferase) domain 1 410 617 - -
Tsu01g04854 670 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 670 - -
Tsu01g04854 670 SMART serkin_6 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04854 670 MobiDBLite consensus disorder prediction 647 670 - -
Tsu01g04854 670 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Tsu01g04854 670 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 670 IPR044652 -
Tsu01g04854 670 SUPERFAMILY Protein kinase-like (PK-like) 312 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04854 Tsu-Chr1 55574325 55576782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04854 21 670 Receptor kinase-like Gene Family AT1G25390 45.358 3.56e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu01g04854 Pkinase 3.6e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04854 01 55574325 55576782 Tsu01g04854 01 55574325 55576782 ECH