Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04844 ATGGACTCAAACACTTCTAGTTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTATCAGGATAAACAAGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAAGTGTTCAACATGATGCTTATCATTCTTCTGCCAATTTGTATGATGTTGACCTTATGGATTGGCCTAATATGAAGAATTCAAGCACAACACATTCTAGATCTGCACATGAAAActttgaagaagaaatagaGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTCTCTATTGGTAGGAAAATTTGTATTCTTGATCATAGAGGATACTCTAGTCTATCAATTCAATTAGAAGACATGTTTGGTAGCCAATCAGTTTGTGGCATAAGATTGTTTGAATCTGGATCAGAATATTCATTATTCTACAAGGACAGAGAAGATAAATGGAGGACTGTTGGTGATGTCCCATGGAAGGAGTTTGTAGAATGTGTGAAAAGGCTAAGGATTGCAAGAAAGAATGGTGGCTATGTTAATTAA 543 0.3573 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGSVQHDAYHSSANLYDVDLMDWPNMKNSSTTHSRSAHENFEEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHRGYSSLSIQLEDMFGSQSVCGIRLFESGSEYSLFYKDREDKWRTVGDVPWKEFVECVKRLRIARKNGGYVN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04844 180 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
Tsu01g04844 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 176 IPR003311 GO:0005634|GO:0006355
Tsu01g04844 180 Gene3D - 82 178 - -
Tsu01g04844 180 Pfam AUX/IAA family 61 174 IPR033389 -
Tsu01g04844 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 176 - -
Tsu01g04844 180 SUPERFAMILY CAD & PB1 domains 88 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04844 Tsu-Chr1 55474703 55476449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04844 83 171 B3 DNA Binding Superfamily AT5G20730 38.202 3.87e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tsu01g04844 AUX_IAA 1.7e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04844 01 55474703 55476449 Tsu01g04844 01 55474703 55476449 ECH