Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04839 atgGAGGCGCAACAACAACCTCCAACGCCGTCAACCGCACCACCGTTATCCTCCGTCGCACCTCCGCCACCACACCTCAACTATCCCGAATCGGTCGATTCCTCTCCTCGCTCCCGTAACACCGACTCATGGGACGAACCTTTCCCTCCGGCGTCATCAAAACTCCGTCTGATGTGCAGTTACGGCGGCCACATCGTCCCTCGTCCACATGACAAATCACTCTGTTACGTCGGCGGTGATACACGAATCATCGTCGTTGAACGCGCAACCTCACTCGCGGACTTATCCACGCGCCTCTCCAAAACCTTCCTTAATGGAAGATCTTTCACCCTCAAGTATCAACTCCCAAACGAAGACCTAGATTCGTTAATTTCAGTTACAACCGATGAAGACCTAGAAAATATGATCGATGAATACGATCGAACGAATTCGTCAAATTCATCTCTCAAACCCTCACGAATTCGTCTTTTTCTATTTCCAACTAAACCTGAATCTGCTCACTCAATTCCTCCACAAATTCTCGATACTTCTGCGAAATCCGATTATTGGTACCGTGATGCGTTAAACGGTGCTGGATTGCTTAACAGAGGGTTTTCAGATTCTGCTTCTGTTAACTGTCTTTTAGGTCTTGATGACGATGTTGCTGCGAATAATATTGAAACTGGTTCAAGAGAAGCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAAGATGTTCACTCTGTTCCTGATTCACCTATGTTGGAGACTACATCGTCTTTTGGTTCAACTTCTTCGTCTCCGTCGTTGGCTAATTTGCCGCCGATTAGGGTGCATGTGGAAGATAGTGGTTCTGGTGGTGTTAGggtacaacaacaacaactgcAACAACTGCAACAGCAGCAGGATCAGAAGGTTTTGGGAATTGAGGAACAGTTTGCTCAAATGGGAGTTGTTGTTGGTGGAATTGGACAGAAGCAACAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTGCCGACTACACTTTCTGTGGCGGCGGTTGGTGTTCCGGTGGTTATTGGTGATTATCAGAATAGGGTTTTCTCTGATGATGAGAGATCGGATCATGGAGTGGCTGTAGGATATAGAAAACCACCAACTCCTCAGCCACAAATTGTTCAAGCACAATCTCAAGCACAATCTCAGGCACAATCTCAGGCACAATCTCAAGCACAAGCACAAACGCAGACACAGTCACAACAACCTCTTCAATTTCAACAGAAGTCAAGTGGTGGCACTGATTTACCTTCTCCTGATTCAGTTTCAAGTGATAATAGTCTTTCAAATGCAATGTCGCGTCAAACACCCGCTGTTATCTATCAAGAGCAAATTCAGATTCAACCTGGAACTACAAGGGTTCTAAGCAACCCTGTGGATCCAAAACTCAATTTGGCGGATTCACATGGTAGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTACTGCAACAGCAATTTGAACtccagcagcagcaacaacaacaacagcctCAACATCAGCCTCAAcatcagcagcaacaacaatttCAACATCAGCAGCAGCAGTTTATACATGGTGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCTTCACAGCAACAACCCCATCAGCAGGTTTACTATGTGCCTGCAAGACAGCCACAAGCTTACAATCTTCCTGTGCAGCAGGGTAATATCGGTGAATCTGCTGCAACAATCCCTTCTAGTAGACCCCAAAACCCTCCAAACCCTACTACATTGGTTCAACAAAATGCAGCTTACACCCCCGTCAGAAATGCTCCTCTACCCAAAACTGAAATGACGGCGGCTGCTTACAGAACTGCAACTGCAGGCAACCCTCAATTTGTACAAGTTCCTACTGGTCAGCATCAGCAGCAATATGTCACTTACTCTCAGATCCACCATCCATCCCAATCCATGGCCCCTAATTCTGCCGCCCCTGCAAATTATGCTTATGAATATGGTGGTGATGCTGCTCAAATATACTACTCTCAGCCTATGGCGCCCACAATGCCGTCACAGTACCAGACCATGGCAGCTGCCAATATGATGCAGACGGAAGTTTCTCCACAGCATCCAGACGGCTTAAAGCAGCAGATAAGAACCTCACAGCCACTATAA 2202 0.45 MEAQQQPPTPSTAPPLSSVAPPPPHLNYPESVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVVERATSLADLSTRLSKTFLNGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTNSSNSSLKPSRIRLFLFPTKPESAHSIPPQILDTSAKSDYWYRDALNGAGLLNRGFSDSASVNCLLGLDDDVAANNIETGSREAPEGVSQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDSGSGGVRVQQQQLQQLQQQQDQKVLGIEEQFAQMGVVVGGIGQKQQDEGFAVMSSPPHPPVPTTLSVAAVGVPVVIGDYQNRVFSDDERSDHGVAVGYRKPPTPQPQIVQAQSQAQSQAQSQAQSQAQAQTQTQSQQPLQFQQKSSGGTDLPSPDSVSSDNSLSNAMSRQTPAVIYQEQIQIQPGTTRVLSNPVDPKLNLADSHGRIQMQQHVQDPGYLLQQQFELQQQQQQQQPQHQPQHQQQQQFQHQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHQQVYYVPARQPQAYNLPVQQGNIGESAATIPSSRPQNPPNPTTLVQQNAAYTPVRNAPLPKTEMTAAAYRTATAGNPQFVQVPTGQHQQQYVTYSQIHHPSQSMAPNSAAPANYAYEYGGDAAQIYYSQPMAPTMPSQYQTMAAANMMQTEVSPQHPDGLKQQIRTSQPL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04839 733 MobiDBLite consensus disorder prediction 8 29 - -
Tsu01g04839 733 SUPERFAMILY CAD & PB1 domains 70 169 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 387 451 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 31 47 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 507 534 - -
Tsu01g04839 733 CDD PB1_UP2 58 159 - -
Tsu01g04839 733 Pfam PB1 domain 70 160 IPR000270 GO:0005515
Tsu01g04839 733 SMART PB1_new 69 159 IPR000270 GO:0005515
Tsu01g04839 733 MobiDBLite consensus disorder prediction 251 272 - -
Tsu01g04839 733 ProSiteProfiles PB1 domain profile. 54 161 IPR000270 GO:0005515
Tsu01g04839 733 PANTHER OS05G0427100 PROTEIN-RELATED 15 721 - -
Tsu01g04839 733 Gene3D - 74 159 - -
Tsu01g04839 733 PANTHER EXPRESSED PROTEIN 15 721 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 223 273 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 713 733 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 1 49 - -
Tsu01g04839 733 MobiDBLite consensus disorder prediction 365 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04839 Tsu-Chr1 55437814 55440846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04839 51 231 MAP Kinase Kinase Kinase AT1G79570 35.326 2.41e-25 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04839 01 55437814 55440846 Tsu01g04839 01 55437814 55440846 ECH
Tsu01g04839 01 55437814 55440846 Tsu02g00072 02 451028 452509 ECH
Tsu01g04839 01 55437814 55440846 Tsu03g03102 03 42783579 42786904 ECH