Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04838 ATGAGAAGAGTAGAATTTGAAGTCTTTTCAAAAGAATTACTACTACTTCACATGGCGTTGGGAGGCTTCTTATCTTTTGCTAAATTTTGGGCATTATTTCAGGGAGGGAGACAGATTGACCCTTCTGCACATACAATAAAGTCTCATGGAGCCACACTTGCAAGAAATCATCTTCATGATTGGCTTATATTGGTGCTTCTCATACTAATAGAGGTTATCCTCAATGTAATTCATCCATTTCGCCGTTTTGTGGGAAGGGACATGATGGAAGACCTTATGTATCCAATGAAAGAAAATACTGTGCCTATATGGGCTGTTCCTCTTTATGCAGTTCTGTTGCCAATTACTGTGTTCATCATCTTCTATATGCGTAGGAGAGATGTGTATGATTTGCACCACAGTGTTCTAGGCCTCCTATTTGCTATTCTGATAACTGGGGTGTTGACTGATTCAATTAAAGATGGTGTTGGCCGGCCACGGCCAGACTTCTTTTGGCGTTGCTTTCCTGATGGAGTACAGGTGTATGATAGATTAGGAGGTGTAGTTTGCCATGGCAAGGCCAGTGATATAAAAGAAGGACATAAGAGTTTTCCAAGTGGTCATACATCATGGTCCTTTGCAGGTCTTGGTTTTCTCTCCTTGTATCTATGCGGGAAGATTAAAGTTTTTGATCGCAAAGGGCATGTGGCAAAATTATGCGTTGTGTTTTTCCCTCTACTTGTTGCCTGTATGGTTGGAATCTCTAGAGTGGATGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTTCTAGGTCTTGTTGTTACTACATTTTGCTATTCACAGTTCTTCCCTCCTCCCTATAACGATGATGgATGGGGTCCATATGCATATTTTGTAGCTATGGAGGAATCAAGAAACAATGCAAGTGTGAATCGGGAATCACCTGTTGTACAAACCATAGATGATAGTAGGCTTGCAAATCAAGTGCCAAGGAGAAATGGTGATGCATTCACCCCTTTCACTTATCTTAGCCCAACCTTGGAAGCCATGGAGATGGGACACAACACACAATGTTGCAGCAAAAAAATGCCAGAAATTCAGTTGGGTGTACACACTATCAGATCACATGGAGCTAGAGTCGCAAGGATACATATGCATGACTGGTTAATTCTTTTGCTTCTTGTGGTAATTGATGCTGTCTTGAATATAATAGAGCCATTTCACCGTTTTGTTGGAGAAGGGATGTTGACGGACCTTAGATACCCACTGAAGGATAACACGATTCCCTTTTGGGCAGTTCCGATAATAGCAATATTGCTGCCACTTGCCGTCTTTCTCGTTTACTATTTCATTCGAAAGGATGTTTATGACTTTCACCATGCCATATTAGGCCTTCTATTTTCCGTACTCATTACTGCGGTGATAACTGATGCTATTAAAGATGGTGTTGGACGGCCACGGCCGGACTTCTTCTGGCGCTGTTTCCCTAATGGAACAGGGGTGTTTCATAAAGTAACAGGTGATGTTCAGTGTACTGGAGATAAAAGTGTTATAAAGGAGGGGCACAAAAGTTTCCCGAGTGGGCATACATCTTGGTCCTTTGCTGGTCTTGTTTATCTCTCTTGGTATCTATCCGGAAAAGTTAGGGTGTTTGATCGCAGGGGCCACGTTGCAAAGCTCTGTCTTGTTCTCTTACCCCTCCTTACGGCAGCTTTAATTGCTGTTTCCCGTGTTGATGATTATTGGCATCATTGGCAAGATGTGTTTGCTGGAGGTCTTATAGGGACAacaatttcttccttttgttaCTTACAATTCTTTCCACCTCCATATGACAGTGAGGGTTGGGGACCTCATGCATATTTCCAGATGTTAGCTGAATCTCGTAATGGTGCTCAACCGCCTGTTATCATTGACAGTCAAGTTGCGCAATCCGCAGAGCTTCAGACTGTATCTTTGTATATCCCATCTCAACATGATGGAGATGCACGAGGCAATAACTGGGATTCAAGCCCCATGTTAGGTGGTGGGTTATCACAAAATGCAAGGATGCATTGA 2046 0.4238 MRRVEFEVFSKELLLLHMALGGFLSFAKFWALFQGGRQIDPSAHTIKSHGATLARNHLHDWLILVLLILIEVILNVIHPFRRFVGRDMMEDLMYPMKENTVPIWAVPLYAVLLPITVFIIFYMRRRDVYDLHHSVLGLLFAILITGVLTDSIKDGVGRPRPDFFWRCFPDGVQVYDRLGGVVCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLCGKIKVFDRKGHVAKLCVVFFPLLVACMVGISRVDDYWHHWQDVFAGGLLGLVVTTFCYSQFFPPPYNDDGWGPYAYFVAMEESRNNASVNRESPVVQTIDDSRLANQVPRRNGDAFTPFTYLSPTLEAMEMGHNTQCCSKKMPEIQLGVHTIRSHGARVARIHMHDWLILLLLVVIDAVLNIIEPFHRFVGEGMLTDLRYPLKDNTIPFWAVPIIAILLPLAVFLVYYFIRKDVYDFHHAILGLLFSVLITAVITDAIKDGVGRPRPDFFWRCFPNGTGVFHKVTGDVQCTGDKSVIKEGHKSFPSGHTSWSFAGLVYLSWYLSGKVRVFDRRGHVAKLCLVLLPLLTAALIAVSRVDDYWHHWQDVFAGGLIGTTISSFCYLQFFPPPYDSEGWGPHAYFQMLAESRNGAQPPVIIDSQVAQSAELQTVSLYIPSQHDGDARGNNWDSSPMLGGGLSQNARMH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04838 681 SMART acid_phosph_2 456 599 IPR000326 -
Tsu01g04838 681 SMART acid_phosph_2 135 275 IPR000326 -
Tsu01g04838 681 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 57 282 IPR036938 -
Tsu01g04838 681 MobiDBLite consensus disorder prediction 658 681 - -
Tsu01g04838 681 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 379 607 IPR036938 -
Tsu01g04838 681 PANTHER LIPID PHOSPHATE PHOSPHATASE 354 647 IPR043216 GO:0006644
Tsu01g04838 681 PANTHER LIPID PHOSPHATE PHOSPHATASE 33 347 IPR043216 GO:0006644
Tsu01g04838 681 CDD PAP2_containing_1_like 413 602 - -
Tsu01g04838 681 CDD PAP2_containing_1_like 92 278 - -
Tsu01g04838 681 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 377 610 - -
Tsu01g04838 681 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 57 286 - -
Tsu01g04838 681 Pfam PAP2 superfamily 458 603 IPR000326 -
Tsu01g04838 681 Pfam PAP2 superfamily 135 279 IPR000326 -
Tsu01g04838 681 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 354 647 - -
Tsu01g04838 681 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 33 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04838 Tsu-Chr1 55400978 55419100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04838 359 647 Lipid Metabolism Gene Families AT1G15080 76.471 8.80e-157 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04838 01 55400978 55419100 Tsu01g04838 01 55400978 55419100 ECH