Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04836 ATGGCCGTTGACAGAGAATCTCTCACCAATGCTGATTCTGGCCAATCTCGTCTTCACGAGCTTGGTTACAAACAAGAACTCAAACGCGACCTTTCGGTACtttcaaattttgcattttCATTTTCGATTATATCAGTATTAACTGGAGTAACTACACTTTACAATACTGGTTTAAACTATGGAGGTCCTGTTTCACTTGTATATGGATGGCTTATTGCTTCTTTATTTACCATGCTTGTTGCTTTATCTATGGCTGAAATTTGTTCTTCTTATCCAACTTCTGGTGGTCTTTATTATTGGAGTGCTAAACTTGCTGGTCCTAATTGGGCACCTTTTGCTTCCTGGATTACTGGCTGGTTCAATATTGTTGGTCAGTGGGCAGTGACAACAAGTGTAGATTTTTCACTTGCACAGCTCATTCAGGTTATCATTCTTCTTAGTACTGGTGGAAAAAACCGCGGTGGTTATGAAGGATCCAAATATGTAACTATTGCTTTCCATGCTGGAATTTTGGTTCTACATGGTATAATGAACAGCCTTCCAATCTCATGGTTATCATTCTTAGGACAGTTGGCTGCTTTCTGGAATGTTTTAGGTGTTTTTGTGCTTATGATTATCATTCCATCTGTTGCACCGGAAAGAGCGAGTGCCAAGTTTGTTTTCACTAATTTCAATAGCGACAACGGGGAAGGAATCAATAGTAAGCCGTATATATTTCTCTTGGGACTTCTAATGAGTCAGTACACCCTAACAGGATATGATGCATCAGCTCATATGACAGAGGAAACCAAGGACGCTGATATTAATGGACCAAAAGGAATTATCAGTGCTGTTGGGATATCTGTTATTGCTGGATGGGGTTACATACTAGGAATTACCTTTGCCGTTACCGATATCCCTTACCTTTTGAATGAAAATAATGAAGCTGGCGGATACGCCATAGCAGAAGTATTTTATCTTGCATTTAAGAGAAGATATGGCCATGGATTTGGTGGCATTATTTGCTTGGGAATTGTTGCTGTTGCTATATTTTTCTGTGGTATGAGTTCAGTTACAGCCAATTCAAGAATGGCTTATGCATTCTCAAGAGATGGAGCCATGCCATTGTCATCATTGTGGCATAAAGTTAACAGCCAGGAGGTCCCCGTAAACGCTGTTTGGCTTTCCGTTATAATATCGTTTTGCATGGCACTAACGTCTCTTGGAAGCATAGTGGCATTTGAAGCCATGGTATCCATAGCAGTGATTGGTCTCTACATTGCTTATGCACTACCTATCTTCTTCAGAGTAACCTTGGCGCAAAAGCGTTTCATAGCAGGGCCTTTCAACTTGGGCCATTACGGCGTCATTGTTGGTTGGATTGCAGTTCTTTGGGTGGCAACAATCTCTATACTATTCTCATTGCCTGTTTCCTACCCAATAACCATTGAGACACTAAACTACACTCCTGTTGCTGTTGGATGTTTGCTCATTATTGTACTTTCTTACTGGATAATCAGTGGTAGGCATTGGTTTAGAGGCCCTATAACCAATTTATAA 1539 0.4022 MAVDRESLTNADSGQSRLHELGYKQELKRDLSVLSNFAFSFSIISVLTGVTTLYNTGLNYGGPVSLVYGWLIASLFTMLVALSMAEICSSYPTSGGLYYWSAKLAGPNWAPFASWITGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNRGGYEGSKYVTIAFHAGILVLHGIMNSLPISWLSFLGQLAAFWNVLGVFVLMIIIPSVAPERASAKFVFTNFNSDNGEGINSKPYIFLLGLLMSQYTLTGYDASAHMTEETKDADINGPKGIISAVGISVIAGWGYILGITFAVTDIPYLLNENNEAGGYAIAEVFYLAFKRRYGHGFGGIICLGIVAVAIFFCGMSSVTANSRMAYAFSRDGAMPLSSLWHKVNSQEVPVNAVWLSVIISFCMALTSLGSIVAFEAMVSIAVIGLYIAYALPIFFRVTLAQKRFIAGPFNLGHYGVIVGWIAVLWVATISILFSLPVSYPITIETLNYTPVAVGCLLIIVLSYWIISGRHWFRGPITNL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04836 512 PANTHER AMINO-ACID PERMEASE BAT1 HOMOLOG 8 511 - -
Tsu01g04836 512 PIRSF AA_transporter 13 508 - -
Tsu01g04836 512 Gene3D Amino acid/polyamine transporter I 25 504 - -
Tsu01g04836 512 PANTHER AMINO-ACID PERMEASE BAT1 8 511 - -
Tsu01g04836 512 ProSitePatterns Amino acid permeases signature. 61 92 IPR004840 GO:0006865|GO:0016021|GO:0055085
Tsu01g04836 512 Pfam Amino acid permease 31 488 IPR002293 GO:0016020|GO:0022857|GO:0055085
Tsu01g04836 512 TIGRFAM 2A0304: amino acid permease 18 508 IPR004756 GO:0006865|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04836 Tsu-Chr1 55389891 55394714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04836 78 512 Organic Solute Cotransporters AT2G01170 77.241 0.0 660
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04836 01 55389891 55394714 Tsu01g04836 01 55389891 55394714 ECH