Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04827 ATGCTCTCAACTCCATTGTTtcccaaaaccctaaacccctCATTTCATCTTCCATTTCTCGCCATGAAGGACCGCCCTTCGCTGTCCTCCCATGGCGCCATCTATGTTCCTCCTCACCACCGTCTACGCTCCGTCATTACCTCCACCAACTCCCCCGCTCCTGTTTCCGCCAAATTCCGCGAAAATCACACACCCGCCGCACCTACCACTCTCCAAACTCCCTTATCGGCAAATTCGCGCTTTGTTTCTGCTTACGACGACGTCATTTCCGAGGATTGGTCTCATCGTGAAGTTGAGCTTCCTTCACTTCCGAATGGTTTTCCCAATGAGGTCATGGAGGAGTGGAAGAGGAAATTTACAATGCTGTTAAATGATAAGAGTAAGCAAGAGTTGATTTCTAGGGAGAAAAAAGATAGACGTGATTTTGATGAAATATCAGCTTTGGCAACTAGAATGGGATTGTATAGCCAAATGTATTCGAAGGTCGTTGTCTTCAGTAAGGTGCCACTTCCGAATTACAGATTTGATTTGGACGAAAGACGGCCCCAGAGGGAGGTGAGCATGCCTATCACCGTGTTTAGGCGGGTTGGTGCATATTTTGAAGAATACCTTAGCCAAAAGTCCAGGATAAACAAAAGCTTTTCAGATTTGTCTTTTGCAAGATCAAGCAGTGATGGCAGTCTTGGTACAGATGAAGGGCTTTTCGTGCAACCTGAGCCACTAGCATCCACTAAGGCTGTTGTGGAGAAAATTTGCCGGCAGATAAGCTTACAAATGCGTGATCAACAACAAGCTCGGCAGGAATTACCTGAAGGAAGAAAAATACTAGAATTTCGTAGCAATCTCCCTGCCTATAAAGAGAGAGAAACAATATTATCAGTCATATCAAAGAATCAGGTAGTCGTCATTTCAGGTGAAACAGGTTGTGGTAAGACAACACAAATTCCACAATTTATTTTGGAGTCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCGGAAAGGGTTGCTTTTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGTCTGGAGGGAATGAAAGGGAGGGATACCCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTAGCTGATAGAAACCTTAAAGGTGTCACACATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTTAAAGAACTCCTTCCCCATCGGCCCGAACTGAAACTGATTTTGATGAGTGCCACCCTAGATGCAGAGCTCTTCTCTTCATACTTCAATGGGGCTCCAATAGTGAACATACCGGGATCTACACACCCTGTTAGAACTCTTTTTTTGGAGAACATTCTTGAAATGACGGGCTATCAATTGACTCCTTCTAATCAAATTGATGATTATGGTCAAGAAAGGGCGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGTTTCTGCTGTAGAGGATGCAATTAGATCTGCTGATTTCAAAGAGTACAGCCTTCAGACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATCCTGTGTGATATTTGTAATAATAAAAGGCCTGGTGCTGTTTTGGTTTTCATGACGGGGTGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCAAACACATACTATCTTGGGAGATCCGAAGCGTGTTTTGTTGCTTACGTGTCATGGCTCAATGGCTAGTTCAGAGCAAaaattaatatttgaagAGCCTGAAGACGGAGTAAGAAAAATAGTGCTAGCAACCAATATTGCTGAAACGAGCATCACAATAgatgatgttgtttttgttctggACTGTggaaaagcaaaagaaacaTCATATGATGCACTGAACAACACACCTTGTCTGCTTCCTACATGGATCTCTAAGGCTTCTGCTCATCAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCTGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGCAGAGTATCAATTGCCGGAAATTTTGAGAACACCTCTGCAGTCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCAGACTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATACTCGCGGTACAAAATGCAgttgaatatttaaaaataattgggGCTTTGGATGAGAATGAGAATCTGACTGTTCTAGGACGCTATCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGTGCCATATTCAATTGCTTGGATCCCATATTAACTATTGTTGCTGGACTTAGCGTAAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCAGCAAAAGCTCAATTCTCGGGTGCATACAGTGACCACCTAGCGCTTGTACGTGCCTATAAGGGTTGGAAAGATGCTGAGATGGACCTGGGTGGATATGAATATTGCTGGAAAAACTTTCTTTCATTCCAATCCATGAAAGCCATTGATGCTCTTCGGAGGGAGTTCATAGGCTTGGTTACAGATATTGGATTAGTTGATAGCAACGCAACCAGCTGTGACTCATGGAGCTATGATGTGAATCTCATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAACTTGTTCTGTGGTGCACAATGAGAAGTCATTCGCATTGAAAACAATGGAGGATGGTCAAGTGCTCTTATATTCGAACTCGGTTAATGCTCGGGAAACTAAAATTCCATATCCGTGGTTAGTTTTTAATGAGAAGATAAAAGTGAACTCGGTTTTTCTCCGTGACTCAACAGCTGTGTCTGATTCAGTGCTGCTTTTGTTTGGTGGAAGCATATCAAAAGGAGATGCTGATAATCACTTAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGGAACCTACTGTTGCTGACATGTATCAGAGTTTAAGGAGAGAACTTGATGACTTCATTCAAAGCAAACTACTTTCTCCAAGAATGAGCATACACTCATTTCACAGCCTCTTATCTGCGGTACGGTTTCTGATTTCCAACGACCCGTGTGAAGGCAGATTTGTATTTGGTCGCCAGGTCCTTAAACCATCAAAGAAATCTGTGATGGCCTCACAACCAGTATCATTGGTTTCAAGGACGGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACTTTGCTTACAAGAGCAGGACATGCTCCACCTGTCTACAAGACTAAACAGTTGAAGAACAACCAGTTTCGGACTACAGTTGAGTTCAACGGAATGGAGATAATGGGCCAACCTTGTAACAATAAGAAGAGTGCAGAGAAAGATGCTGCAGCTGAAGTGCTGCAATGGTTGATGGGCAAGCAAGCTGGCTGCGAGTATATTGATCACATGTCGatgtttcttaaaaaaagtaaGAAGAATCACAGTTAA 3528 0.4135 MLSTPLFPKTLNPSFHLPFLAMKDRPSLSSHGAIYVPPHHRLRSVITSTNSPAPVSAKFRENHTPAAPTTLQTPLSANSRFVSAYDDVISEDWSHREVELPSLPNGFPNEVMEEWKRKFTMLLNDKSKQELISREKKDRRDFDEISALATRMGLYSQMYSKVVVFSKVPLPNYRFDLDERRPQREVSMPITVFRRVGAYFEEYLSQKSRINKSFSDLSFARSSSDGSLGTDEGLFVQPEPLASTKAVVEKICRQISLQMRDQQQARQELPEGRKILEFRSNLPAYKERETILSVISKNQVVVISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPELKLILMSATLDAELFSSYFNGAPIVNIPGSTHPVRTLFLENILEMTGYQLTPSNQIDDYGQERAWKMNKQAPRKRKSQIVSAVEDAIRSADFKEYSLQTQESLSCWNPDCIGFSLIEYILCDICNNKRPGAVLVFMTGWDDISSLKEKLQTHTILGDPKRVLLLTCHGSMASSEQKLIFEEPEDGVRKIVLATNIAETSITIDDVVFVLDCGKAKETSYDALNNTPCLLPTWISKASAHQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQSPEILAVQNAVEYLKIIGALDENENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKAQFSGAYSDHLALVRAYKGWKDAEMDLGGYEYCWKNFLSFQSMKAIDALRREFIGLVTDIGLVDSNATSCDSWSYDVNLIRAVICYGLYPGTCSVVHNEKSFALKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISKGDADNHLKMLGGYLEFFMEPTVADMYQSLRRELDDFIQSKLLSPRMSIHSFHSLLSAVRFLISNDPCEGRFVFGRQVLKPSKKSVMASQPVSLVSRTESGPGGDNSKSQLQTLLTRAGHAPPVYKTKQLKNNQFRTTVEFNGMEIMGQPCNNKKSAEKDAAAEVLQWLMGKQAGCEYIDHMSMFLKKSKKNHS 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04827 1175 CDD DSRM_SF 1093 1147 - -
Tsu01g04827 1175 SMART ultradead3 280 473 IPR014001 -
Tsu01g04827 1175 SMART ha2_5 742 832 IPR007502 GO:0004386
Tsu01g04827 1175 Pfam DEAD/DEAH box helicase 291 442 IPR011545 GO:0003676|GO:0005524
Tsu01g04827 1175 CDD DEXHc_RHA-like 298 458 - -
Tsu01g04827 1175 SMART helicmild6 574 680 IPR001650 -
Tsu01g04827 1175 MobiDBLite consensus disorder prediction 1071 1090 - -
Tsu01g04827 1175 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 72 1100 - -
Tsu01g04827 1175 Pfam Double-stranded RNA binding motif 1088 1150 IPR014720 -
Tsu01g04827 1175 Pfam Helicase conserved C-terminal domain 550 679 IPR001650 -
Tsu01g04827 1175 Gene3D - 545 699 IPR027417 -
Tsu01g04827 1175 Gene3D - 241 461 IPR027417 -
Tsu01g04827 1175 Gene3D - 722 826 - -
Tsu01g04827 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 840 IPR027417 -
Tsu01g04827 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 720 IPR001650 -
Tsu01g04827 1175 Pfam Helicase associated domain (HA2) 743 816 IPR007502 GO:0004386
Tsu01g04827 1175 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1087 1152 IPR014720 -
Tsu01g04827 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 459 IPR014001 -
Tsu01g04827 1175 Gene3D - 1064 1155 - -
Tsu01g04827 1175 SUPERFAMILY dsRNA-binding domain-like 1082 1150 - -
Tsu01g04827 1175 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 898 980 IPR011709 -
Tsu01g04827 1175 SMART DRBM_3 1088 1151 IPR014720 -
Tsu01g04827 1175 CDD SF2_C_RHA 529 688 - -
Tsu01g04827 1175 PANTHER ATP-DEPENDENT RNA HELICASE 72 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04827 Tsu-Chr1 55270259 55283177 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04827 01 55270259 55283177 Tsu01g04827 01 55270259 55283177 ECH