Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04811 ATGGCTTCACGCAGACTCGTATCTTCTCTGATTCGTTCTTCACTTCGTCGATCTTCATCCAAACCCTCCATTTCCGCCTCAACATCGAGGCTCACATCACAATCCCGTGCTTCCCCTTACGGTTACCTTTTGAATCGTGTCGCCGATTATGCAACAGCCGCCGCGGCTGCTACAGCTCCATCTACGCCTCCGGCGAAGAAGGAGGTTCCCGGTGGTGGTAAAATAACCGATGAGTTCACTGGTAAAGGCGCGATCGGACACGTTTGTCAAGTTATTGGTGCCGTCGTTGACGTCAGATTCGAGGAAGGTTTGCCTCCGATCTTGACCGCACTTGAGGTTTTGGATCATTCTTCACGATTGGTTTTGGAAGTTGCACAGCATTTGGGTGAAGGTGTTGTGAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGATCTCCTATCAGTGTTCCTGTTGGTAGGGCTACCCTTGGTCGTATCATGAATGTTATCGGAGAACCTATTGATGAAAAGGGCGAATTCAAAACCGAGCACTATTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAGCAAGAGATCCTTGTTACTGGTATCAAGGTTGTTGATCTGCTTGCACCATACCAAAGGGGAGGAAAGATCGGGTTGTTTGGTGGTGCCGGTGTAGGAAAGACTGTGCTTATTATGGAGCTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTTTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGGTGATAAGCAGAGTGAAAGCAAATGTGCCCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGTCTCACCGTTGCTGAACACTTCCGTGATGCTGAAGGACAGGATGTGCTTCTTTTCGTTGACAACATTTTCCGTTTCACTCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACCGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTGTCAAGACAGATCTCTGAACTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAATTACAAGAATCTTCAGGATATCATTGCAATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGGTTCTTAAGCCAGCCTTTCCATGTGGCTGAAGTTTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAGGGTGTGTTGGATGGCAAATATGATGACCTTTCAGAGCAAGCATTTTACATGGTTGGTGGTATTGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAACATAA 1671 0.4644 MASRRLVSSLIRSSLRRSSSKPSISASTSRLTSQSRASPYGYLLNRVADYATAAAAATAPSTPPAKKEVPGGGKITDEFTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDEKGEFKTEHYLPIHREAPAFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQGVLDGKYDDLSEQAFYMVGGIDEVIAKAEKIAKESAT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04811 556 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 82 156 IPR036121 GO:0046034|GO:1902600
Tsu01g04811 556 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g04811 556 PANTHER ATP SYNTHASE 3 555 - -
Tsu01g04811 556 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Tsu01g04811 556 Gene3D - 157 434 IPR027417 -
Tsu01g04811 556 CDD ATP-synt_F1_beta_N 84 157 - -
Tsu01g04811 556 ProSitePatterns ATP synthase alpha and beta subunits signature. 423 432 IPR020003 GO:0005524
Tsu01g04811 556 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 435 551 - -
Tsu01g04811 556 Gene3D - 74 156 - -
Tsu01g04811 556 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 555 - -
Tsu01g04811 556 Gene3D - 435 556 IPR024034 -
Tsu01g04811 556 PIRSF ATPase_subunit_beta 3 556 - -
Tsu01g04811 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 438 IPR027417 -
Tsu01g04811 556 Pfam ATP synthase alpha/beta family, beta-barrel domain 88 154 IPR004100 GO:0046034|GO:1902600
Tsu01g04811 556 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Tsu01g04811 556 TIGRFAM atpD: ATP synthase F1, beta subunit 85 550 IPR005722 GO:0015986|GO:0045261|GO:0046933
Tsu01g04811 556 Hamap ATP synthase subunit beta [atpB]. 83 550 IPR005722 GO:0015986|GO:0045261|GO:0046933
Tsu01g04811 556 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 211 432 IPR000194 GO:0005524
Tsu01g04811 556 SMART AAA_5 223 495 IPR003593 -
Tsu01g04811 556 CDD F1-ATPase_beta 156 437 - -
Tsu01g04811 556 CDD ATP-synt_F1_beta_C 439 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04811 Tsu-Chr1 55090266 55094387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04811 121 493 Primary Pumps ATPases(2) AT1G20260 28.715 2.97e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04811 01 55090266 55094387 Tsu01g04811 01 55090266 55094387 ECH