Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04807 ATGGCCGCGTCACAATCTTCCTCCGCCGCGGGAAACACCAACATCATGCTCGCAATCTTCGAGAAGAAAACAAATACCGTAGATCTCTACCGTCCACTCCGCAATTACATCGCTTTTCACTACTCAGAACGCGAAGCACAAAACCTCGAAGACGATCTCCAAACCCTAAAACAACTCCGTTCCGACATCGAACGTAACTCCGATCCATCTCTCCCTGCACGTCGTGACCTTTTCCAAACCTATTTCAAAGCTCTATGTCAAGTTGAAACTCGATTTCCAATTTCACCTGAACCTGATCATGTCAACGCACTGACTTTCATTTGGTTTGATGCATTTAAACCGAAGCTAAAAGCTTCTCAGCAAAATATTCACCTTGAGAAAGGTTCCGTGTTGTTCAATTTAGGTGCTGTTTATAGTCAGATTGGATTGACGTTTGATCGGAATACTGTCGACGGTCGTCGTCAGGCTTCTCATGCTTTTATGGGTGCTGCTGGTTCATTTGGTTATCTTAGAGATAATGCTTCTATGAAAGTTTCTGTTGGAAGTTCCACTACTCTTGATTTGTCCGTCGAGTGTGCTGGAATGTTGGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTCTTTGAAAACACCATTGCAAAAGGAAGTACTCCTGGTGTTTGTGCTAAGATCTCTAGGCAGGTTGGGCTGTATTATGAGGAAGCATTGGCTGCATTGAATGTTGCGCCTTTAAGCCAGCATTTTGATAAGTCTTGGATAGTTCATGTGCAGTTGAAGGCAGCTATATTCTTTGCAGAAGCTTGTTATAGGTATGGATTAGAGCTGCATGAGAAAGAGGAAATAGCAGAGGAGATTGCACGGCTGAAGAGTGCTATTAGTGTGCTTACTGAGGCGAAGAAAAACTCCAAGGGTGCTGCAGCGCAGCTTCTTGATGCAATTAACAAGTTAGAGGTTAATATAAACAGAAACCTTGAAAGGGCTGTCAAGGAGAATGATAGAGTCTATCTGATGAGAGTTCCTCCTACTAGTTCATTGTCACCCCTTCCGGCGTTTGCTATGGTAAAGCCAATGGTCATGAGTGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCCGACAATAGTGCCAAGGCCCTCTCTAGGTACACTGAAATGGTTGATGACATTATAAGAACACAGGCCGAGAAGTTGCAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAATTGCCTGATTCTATTCTTGCTTTGGAAGGGAATTTTACTCTACCGACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAATCAGAGTTGCAGCAGCTTAAGGACCTAAGGAGGGTGAATCAAGAACTGCTGGTCCAGACCGAGGAGTTATTGCAGAAGGAATCAAGAGAAGATGCTCAATTTAGAAGTCAATTTGGCACCAAATGGACTAGGCCTCAATCAAGTACATTGACAAAGAACTTGTTGGATAGACTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGATAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCACTCATGGCAATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGCTTGGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTAGGGTCTCTCAAACAAAGCTTGAGGCAACTAGAAACTCTAGGAGCTCAAAGGGCTGGTCTCGAAGACATGCTTAGGGAGATGAAAAGGAAGGATGATATATTACCCAAGCTAATGACATCCACCGGTTCTTATGAGGATCTTTTTAAAAAGGAGATAGCAAAATACGACCATATTTCTGAAGAAATTGCTCAAAATATTGAGGCACAAGAGCAACTTTTGCTGCAAATCCAGgctcaaaatgatgatttCTCTATTATCTTCAACCTTGAAGATTACAAATCTTCACGTGAAAAATCCTACAAGCAGATTGAAGCTGCCATTGCAAAGTTTCGTGAAATAAAGGACAATATCAATGAAGGGTTAAAATTCTATGTTACCCTACAGGATGCAATCACAAACGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGATCGAAGATGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAAAAACACGGGTGGCTACAACAACAACTACCCTTCAGTGGgaaaccaaaatcaaagatCCAATACACAAACAGATCCTCGTCCACAAGCACCTTATTATCAACAACCTGAGCAGCCACCAGCTCCTGCCTATGGTCAGGCCCCTCCCCAATATGGCTCTGCACATCATCAGCCTCCACCTCCATACCAAATTCCACCAACATCAGCTTCTCCGTACCCACCCCCTCAGGTCCATCAGCAGCAGCAGCCTCCACCAAACCATGATTATGGCCAACCTGCGTATCCCGGATGGCGTGGTCCATACTACAATGCACACTCACACCCACAACAACAACCTCCTCCTTCTGGTCCTCGACCTCCTTATACCATTCCTTCTCCATATCCTCCACCTCACCAAGGTGGCTACTATAAGCAGCAATAG 2625 0.4404 MAASQSSSAAGNTNIMLAIFEKKTNTVDLYRPLRNYIAFHYSEREAQNLEDDLQTLKQLRSDIERNSDPSLPARRDLFQTYFKALCQVETRFPISPEPDHVNALTFIWFDAFKPKLKASQQNIHLEKGSVLFNLGAVYSQIGLTFDRNTVDGRRQASHAFMGAAGSFGYLRDNASMKVSVGSSTTLDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFDKSWIVHVQLKAAIFFAEACYRYGLELHEKEEIAEEIARLKSAISVLTEAKKNSKGAAAQLLDAINKLEVNINRNLERAVKENDRVYLMRVPPTSSLSPLPAFAMVKPMVMSEVLDASKEKMFASLVPDNSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLESELQQLKDLRRVNQELLVQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAADSDARIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHISEEIAQNIEAQEQLLLQIQAQNDDFSIIFNLEDYKSSREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNTGGYNNNYPSVGNQNQRSNTQTDPRPQAPYYQQPEQPPAPAYGQAPPQYGSAHHQPPPPYQIPPTSASPYPPPQVHQQQQPPPNHDYGQPAYPGWRGPYYNAHSHPQQQPPPSGPRPPYTIPSPYPPPHQGGYYKQQ 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04807 874 CDD BRO1_Alix_like_1 16 371 - -
Tsu01g04807 874 MobiDBLite consensus disorder prediction 788 816 - -
Tsu01g04807 874 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Tsu01g04807 874 CDD V_Alix_like_1 377 713 - -
Tsu01g04807 874 Coils Coil 307 327 - -
Tsu01g04807 874 MobiDBLite consensus disorder prediction 735 766 - -
Tsu01g04807 874 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Tsu01g04807 874 SMART BRO1_2 15 399 IPR004328 -
Tsu01g04807 874 Coils Coil 279 299 - -
Tsu01g04807 874 MobiDBLite consensus disorder prediction 735 874 - -
Tsu01g04807 874 Coils Coil 39 66 - -
Tsu01g04807 874 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 7 855 - -
Tsu01g04807 874 Coils Coil 578 598 - -
Tsu01g04807 874 MobiDBLite consensus disorder prediction 767 781 - -
Tsu01g04807 874 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Tsu01g04807 874 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Tsu01g04807 874 Coils Coil 627 647 - -
Tsu01g04807 874 Gene3D alix/aip1 like domains 423 704 - -
Tsu01g04807 874 PANTHER PCD6 INTERACTING PROTEIN-RELATED 7 855 IPR045251 GO:0071985
Tsu01g04807 874 Coils Coil 451 478 - -
Tsu01g04807 874 Pfam BRO1-like domain 16 394 IPR004328 -
Tsu01g04807 874 MobiDBLite consensus disorder prediction 845 866 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04807 01 55062432 55072942 Tsu01g04807 01 55062432 55072942 ECH