Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04775 ATGCTCTTCACTCACAAAACGCAGTCGTTTCCCGCTGATTTTTCCCCCATTTCTCTGTTCGAAGCTCAAACTTCACTTCACATAGCTTTTTTAGTTCAGACGGAAACGATAATGGCGGTTTTTGGCGGGAAAAAGGTCCATCAAATTGTCACCGGCATCGGCAACAACGGCCTTGGTCAGGTAGTCATCGCCGTCGCTTTCTCCTTCCTTGTTCGCATCTTCTCCGCTCCCGGTCCCGCTCTGTCGCCGGAGAACGACGATGATGTTCCAAACAACGATTCACCCGACGGTGAAACTCCTACTCCCACCGGAAAGGTCACGGCGGTCACAATCCGTTGGAACAATATTAATTGCTCCATTTCTGATAAATCCTCCAACTCCGTGAGatttttgcttaaaaatttGAGTGGAGAAGCTAAACCAGGAAGATTATTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACCTTGCTTAATGTTCTTGCTGGTCAACTGGCAGCGTCGCCTCGGCTTCATTTGAGTGGCCTTTTGGAGTTCAATGGAAAGCCCAGTTCTAGAAACACTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTCTTCTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATAGAATTACAGCTTCCCCACATATCTTCTGTTGAAGAGAGGGACGAATATGTCAACAATCTCCTTTTCAAAATAGGCTTGGTCAGCTGTGCTGATACTAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGCGAAAAGAAACGTTTATCCTTGGCATGTGAACTGCTTGCGAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAGGTTATGGAAACTCTGCGACAACTTGCACTCGATGGTCATACTGTAATTTGTTCTATACATCAGCCAAGAGGTTCAGTTTACAGCAAATTCGATGACATTATCTTGCTAACTGATGGTTCACTTGTTTATGCTGGTCCTGCTGGTGATGAACCATTGGCGTACTTCTCAAAATTCGGGTACCACTGCCCAGATCATGTTAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGATAGTGTTTATTCCTCTCAAAAAAGGATCAACGGGCTTGTTGAGTCATTCTCACAAAGACAGTCTACAATAATATATGCTACTCCGATTACTCTAGATGACCTCTCAAAAAGTAGAAACAGAGTCAGCAAGCGGACTGTAGCAAAAAGGAAAGGGGGCTGGTGGAAGCAATTCCGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGTGATGCACCTACCAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCGGTATTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTTGTGATGTTCTTGATTCATGCAAGCTTATTTCTCATAGGCCTGCGGCTAATATGCATTGTGGAACAACTTTCAATTGTTTTTATgctatatattcaattttgatcTACTATACCCATAGAAAATAA 1596 0.4348 MLFTHKTQSFPADFSPISLFEAQTSLHIAFLVQTETIMAVFGGKKVHQIVTGIGNNGLGQVVIAVAFSFLVRIFSAPGPALSPENDDDVPNNDSPDGETPTPTGKVTAVTIRWNNINCSISDKSSNSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLEFNGKPSSRNTYKFAYVRQEDLFFSQLTVRETLSLAIELQLPHISSVEERDEYVNNLLFKIGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIILLTDGSLVYAGPAGDEPLAYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVYSSQKRINGLVESFSQRQSTIIYATPITLDDLSKSRNRVSKRTVAKRKGGWWKQFRLLLRRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVCDVLDSCKLISHRPAANMHCGTTFNCFYAIYSILIYYTHRK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04775 531 Pfam ABC-2 type transporter 434 488 IPR013525 GO:0016020|GO:0140359
Tsu01g04775 531 CDD ABCG_EPDR 108 339 - -
Tsu01g04775 531 MobiDBLite consensus disorder prediction 81 104 - -
Tsu01g04775 531 Pfam ABC transporter 132 284 IPR003439 GO:0005524
Tsu01g04775 531 ProSitePatterns ABC transporters family signature. 257 271 IPR017871 GO:0005524
Tsu01g04775 531 SMART AAA_5 141 334 IPR003593 -
Tsu01g04775 531 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 111 357 IPR003439 GO:0005524
Tsu01g04775 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 343 IPR027417 -
Tsu01g04775 531 PANTHER ATP-BINDING CASSETTE TRANSPORTER 38 492 - -
Tsu01g04775 531 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 38 492 - -
Tsu01g04775 531 Pfam ABC-2 type transporter 314 372 IPR043926 GO:0140359
Tsu01g04775 531 Gene3D - 103 345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04775 Tsu-Chr1 54877504 54883116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04775 131 339 Calmodulin-binding Proteins AT2G36910 29.577 8.40e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04775 01 54877504 54883116 Tsu01g04775 01 54877504 54883116 ECH