Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g04773 | ATGTCATTCTCACGATCATTCAGAAGATTCCCAAATCTTGTTACACTCTCAAAATCTTACCCACTTTCTTTAACAAGTTCACATTTTTATCACAATTATTCAACACCCACATTCCAATTCATCCATAATCCATCTGGGTCTCTCAAATTCCACACATCACGTCCTAATAAACCCAAAACCACCAACCCAGATGCCGAAACAATCTGCAAAATCTTATCCACCAGACCCGATTCACCCGTCGACGTCTCTCTCGCCAACTTCCCGGTCGAGGTATCACCGGAGCTCGTGGTTCATGTTTTGAACAAACTCAGCAATGCTGGTATTCTCGCTCTTTCTTTCTTCCGTTGGGCGGAGAAACAGAACGGATTCAAGCATAGTACAGAGAGTTTTCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTTAAGATGATTTGGAATTTAGTGGATGACATGAAACAACGAAAATTGCTCAATGGTGAGACTTTCTCGCTCATTGCTCGTAGATATGTTCGAGCTAGGATCATCAAGGAAGCATTGAAGACGTTTGAGAGGATGGAAAAATATGGATTGAAGCCTCAAATTTCGGATTTCAAcaagttaattgatgttttGTGTAAGTCAAAGTTTCATGTTGAGAAAGCACAGgaactgtttgataaaatgagTCAATGGAATTTAGAGCCTAATCTTAAGTCCTATACTATTTTGTTAGAAGGTTGGAGTCAACAGCAAAATTTGTTGAAGGTTAGAGAGGTTTGTAGAGAGATGAGGGATGAAGGTTTTGAGCCTGATGTTGTTACTTATGGTATACTCATCAATGCATATTGTAAGGCTAAAAAATATGATGAGGCTATTGGTTTTTATCATGAGATGCAATTGAAGAATATAAGTCCTAGTCCTCATATATATTGTACTTTGATTATTGGTCTTGGAAATGGGAATAGATTGAATGAAGCTCTTGAATTCTTTGAAAAATCTAAGGTTAGTGGATTTCCACCTGAAGCACCAACTTATAATGCTGTTGTTGGAGCTTACTGCTGGGCAGGGAGGATAGATGATGCTTGCAGAATTGTTGATGAGATGAGAGAACTTGGGATCGGTCCGAATTCTCGAACATATGACATAATACTTGTTCACTTGGTAAAGGGTGGAAGAGCAAAAGAAGCTTACTCAGTTTTCAAGAGAATGAGTAGTGAGGTGGGGTGTGAGCCGAGGGTAAGTACGTATGAAATCATGGTGAGGATGTTTTGTAATGAAGACCAATTGGATTTGGCGATGGTAGTTTGGGATGAGATGAAAGACAAAGGAATCCTTCCTGGAATTCACATGTTCTCGACGTTGATCATTTCCTTGTGTCATGAAAATAAGTTGGATGAAGCATGTAAATACTTTCAACAAATGTTGGATGTTGGCATTCGGCCTACTACCAATATGTTCAGTGCTTTCAAGAAAGCTCTAATGGATGCAGGAATGGAGAATACTGTGATACATTTTGCTCATAAAGTTGATAAATTGAGGAATACTCCATTAATTGCTTGA | 1545 | 0.3812 | MSFSRSFRRFPNLVTLSKSYPLSLTSSHFYHNYSTPTFQFIHNPSGSLKFHTSRPNKPKTTNPDAETICKILSTRPDSPVDVSLANFPVEVSPELVVHVLNKLSNAGILALSFFRWAEKQNGFKHSTESFHALIEALGKIKQFKMIWNLVDDMKQRKLLNGETFSLIARRYVRARIIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMSQWNLEPNLKSYTILLEGWSQQQNLLKVREVCREMRDEGFEPDVVTYGILINAYCKAKKYDEAIGFYHEMQLKNISPSPHIYCTLIIGLGNGNRLNEALEFFEKSKVSGFPPEAPTYNAVVGAYCWAGRIDDACRIVDEMRELGIGPNSRTYDIILVHLVKGGRAKEAYSVFKRMSSEVGCEPRVSTYEIMVRMFCNEDQLDLAMVVWDEMKDKGILPGIHMFSTLIISLCHENKLDEACKYFQQMLDVGIRPTTNMFSAFKKALMDAGMENTVIHFAHKVDKLRNTPLIA | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 406 | IPR002885 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | IPR002885 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 336 | 370 | IPR002885 | - | |
| Tsu01g04773 | 514 | Pfam | PPR repeat family | 339 | 380 | IPR002885 | - | |
| Tsu01g04773 | 514 | Pfam | PPR repeat family | 199 | 241 | IPR002885 | - | |
| Tsu01g04773 | 514 | Pfam | PPR repeat family | 265 | 312 | IPR002885 | - | |
| Tsu01g04773 | 514 | SUPERFAMILY | TPR-like | 266 | 470 | IPR011990 | GO:0005515 | |
| Tsu01g04773 | 514 | Pfam | PPR repeat | 163 | 192 | IPR002885 | - | |
| Tsu01g04773 | 514 | Pfam | Pentacotripeptide-repeat region of PRORP | 388 | 505 | IPR033443 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 301 | 335 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 163 | 194 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 374 | 406 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 234 | 267 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 304 | 335 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 410 | 442 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 268 | 301 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 199 | 231 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 339 | 371 | IPR002885 | - | |
| Tsu01g04773 | 514 | TIGRFAM | PPR: pentatricopeptide repeat domain | 445 | 477 | IPR002885 | - | |
| Tsu01g04773 | 514 | Gene3D | Tetratricopeptide repeat domain | 211 | 378 | IPR011990 | GO:0005515 | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | IPR002885 | - | |
| Tsu01g04773 | 514 | PANTHER | OS01G0505500 PROTEIN | 61 | 511 | - | - | |
| Tsu01g04773 | 514 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 61 | 511 | - | - | |
| Tsu01g04773 | 514 | Gene3D | Tetratricopeptide repeat domain | 379 | 506 | IPR011990 | GO:0005515 | |
| Tsu01g04773 | 514 | Gene3D | Tetratricopeptide repeat domain | 84 | 210 | IPR011990 | GO:0005515 | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 230 | IPR002885 | - | |
| Tsu01g04773 | 514 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 266 | 300 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g04773 | Tsu-Chr1 | 54855751 | 54857611 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04773 | 296 | 511 | Glycosyltransferase | AT1G05670 | 25.114 | 5.05e-12 | 66.6 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu01g04773 | 01 | 54855751 | 54857611 | Tsu01g04773 | 01 | 54855751 | 54857611 | ECH |