Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04766 ATGGGTTTCTTTCAAAGATCATATCTTCCTCTTACCATCGTGCTTTCTCTCTCCTTTCTTTCTCTTGCTTTTTCCCTTGACATGTCCATTATTGACTATGATGCAAAAGTTGAAGAAACACATCTTATGAATATGTATGAATCATGGTTGGTTAAACATGGTAAGGTTTATAATGCATTAGGTGAGAAAGAACTtagatttgaaatatttaaagaTAACCTTAGGTATATTGAAAGTCATAATAATGTTGAGGGTCAAAGTTTTAAATTGGGTCTCACAAAATTTGCTGATCTTACCAATGAGGAATATCGTTCCATGTTTTTGGGAACACGGAGTCGTAAATCTAAAGGTTTGTTATCTGATTCTAAGAAAAGTACTCGTTATGCTTTTCGTGATGACGATAAATTGCCTGAGTCCGTTGATTGGAGGGAGAAAGGTGCCGTTGTTGATGTCAAAGATCAAGGCCAATGTGGGAGTTGTTGGGCATTCTCAACAGTTGGTGCTGTGGAAGGGATCAATAAAATTGTAACAGGTGATCTGATATCTCTATCAGAACAAGAGTTGGTGGATTGTGATAAAGGTTATAACATGGGATGCAATGGAGGTCTTATGGACAATGCTTATGAGTTTATAATGCAAAACGGAGGCATTGATACCGAGGATGATTACCCTTATCGTGCTCGCGACAATACTTGTGATGCAAACAAGAAAAATGCTCACGTAGTCACTATTGATGGATATGAAGATGTTCCTGAAAATGATGAGAAATCCTTGAAGAAGGCTCTTGCATTTCAACCTGTTAGCGTTGCCATTGAAGCTGGTGGCAGGGCATTTCAACTTTACCAATCTGGTGTTTTTACCGGCACTTGTGGAACAGAACTTGATCACGGTGTTGTGGCAGTTGGATACGGAACCGAGAACGGCACAGATTACTGGTTAGTGAGGAACTCATGGGGTTCATCATGGGGTGAGGGTGGTTATATTAAGTTGGAGAGGAATGTGGATGCTCAAACCGGTAAGTGTGGAATTGCAATGGAAGCATCATATCCTGTCAAGAAGGGTCAGAACCCTCCAAACCCTGGTCCTACCCCTCCATCACCTGCAAAGCCTTCAACTGTTTGTGATGAATATTACACTTGCTCAGCTGGAACCACATGTTGTTGCCTTTTTGAGTATGGAAACTTCTGCTTTGCTTGGGGATGCTGTCCTATTGAGTCTGCAACTTGCTGTGATGACGGTTCCAGCTGTTGTCCTCCTGATTACCCCGTCTGTGATGCTAGTGCCGGAACTTGCCGATTGAGTAAAGATAATCCATTTGGAGTGAAAGCTTTGAAACGGACACCTGCTACAAGAACTTGGAGTTGGACTCAACGAAAAACCGCAATGAAAGGAAACTAA 1398 0.4113 MGFFQRSYLPLTIVLSLSFLSLAFSLDMSIIDYDAKVEETHLMNMYESWLVKHGKVYNALGEKELRFEIFKDNLRYIESHNNVEGQSFKLGLTKFADLTNEEYRSMFLGTRSRKSKGLLSDSKKSTRYAFRDDDKLPESVDWREKGAVVDVKDQGQCGSCWAFSTVGAVEGINKIVTGDLISLSEQELVDCDKGYNMGCNGGLMDNAYEFIMQNGGIDTEDDYPYRARDNTCDANKKNAHVVTIDGYEDVPENDEKSLKKALAFQPVSVAIEAGGRAFQLYQSGVFTGTCGTELDHGVVAVGYGTENGTDYWLVRNSWGSSWGEGGYIKLERNVDAQTGKCGIAMEASYPVKKGQNPPNPGPTPPSPAKPSTVCDEYYTCSAGTTCCCLFEYGNFCFAWGCCPIESATCCDDGSSCCPPDYPVCDASAGTCRLSKDNPFGVKALKRTPATRTWSWTQRKTAMKGN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04766 465 SUPERFAMILY Granulin repeat 372 405 - -
Tsu01g04766 465 SMART GRAN_2 374 431 IPR000118 -
Tsu01g04766 465 Pfam Granulin 385 431 IPR000118 -
Tsu01g04766 465 Gene3D Granulin 371 433 IPR037277 -
Tsu01g04766 465 CDD Peptidase_C1A 137 350 IPR039417 -
Tsu01g04766 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Tsu01g04766 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 381 - -
Tsu01g04766 465 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Tsu01g04766 465 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Tsu01g04766 465 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Tsu01g04766 465 SMART Inhibitor_I29_2 46 103 IPR013201 -
Tsu01g04766 465 SMART pept_c1 136 351 IPR000668 GO:0006508|GO:0008234
Tsu01g04766 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Tsu01g04766 465 Pfam Cathepsin propeptide inhibitor domain (I29) 46 103 IPR013201 -
Tsu01g04766 465 SUPERFAMILY Cysteine proteinases 39 351 IPR038765 -
Tsu01g04766 465 Gene3D Cysteine proteinases 28 353 - -
Tsu01g04766 465 PANTHER CYSTEINE PROTEASE 34 381 - -
Tsu01g04766 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Tsu01g04766 465 Pfam Papain family cysteine protease 136 351 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04766 Tsu-Chr1 54805721 54808401 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04766 01 54805721 54808401 Tsu01g04766 01 54805721 54808401 ECH
Tsu01g00431 01 3637276 3641276 Tsu01g04766 01 54805721 54808401 ECH
Tsu07g00928 07 7601360 7605082 Tsu01g04766 01 54805721 54808401 ECH