Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04701 ATGGCTTTAGAGTTACAAGCTCTCAATTCTTCTCCAACAGGAGCTCCTACTCCTTTCCCAACTTTCAAACCACAACAAGATCAAGAGATTCATGAACGTGATTCTTTCGTTAAGAAGAAAAGATCAAAACGACCGCGTATTAGTAATCCACCAACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTTGCACAAAGCggtaacaaaaacaacaacaacaaaatcaacggCTCTGATGATTTTATTCATCACCAAACTGAATCGTTACCGTCGCTGTCACCATCGTTACCGGTGAAGCTGAATCATCGGTGCAGTGTATGTAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCATAAAGCAAGTCACCGCAAATCCTCATCTGAAAATCAAACCACCGCCGTAATTAACGACGCCGTCTCTGTCACAGCCGCTACTATTACCTCCTCCGGTAAGATGCACGAGTGTTCCATCTGTCATAAGAGTTTCCCTACTGGTCAAGCTCTCGGTGGACATAAACGGTGCCACTACGACGGAGgtaaccacaacaacaacagtaacaGCAACGTGAACGCCAATAACAACAGTGGAATCACAATCTCTGATGGCGCCGCCGCTTCTTCCTCCAGCCACCGTGGATTTGATCTTAATTTACCAGCGCCGCTTACGGAATTCTGGTCTCCGTTGGGATTAGGCGGTGGAGATTCGAAGAAGAATAAGGTTAATGTTAATTTGGCCGGAATCGGGGAACAAGAGGTGGAAAGTCCGTTGCCGGTAACCGCCAAAAGGCCGCGTTTGTTTGCGGGTGAAGACGACAAGGATGAAACGGCGTAG 840 0.4393 MALELQALNSSPTGAPTPFPTFKPQQDQEIHERDSFVKKKRSKRPRISNPPTEEEYLALCLIMLAQSGNKNNNNKINGSDDFIHHQTESLPSLSPSLPVKLNHRCSVCNKAFPSYQALGGHKASHRKSSSENQTTAVINDAVSVTAATITSSGKMHECSICHKSFPTGQALGGHKRCHYDGGNHNNNSNSNVNANNNSGITISDGAAASSSSHRGFDLNLPAPLTEFWSPLGLGGGDSKKNKVNVNLAGIGEQEVESPLPVTAKRPRLFAGEDDKDETA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04701 279 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 270 - -
Tsu01g04701 279 Gene3D Classic Zinc Finger 101 178 - -
Tsu01g04701 279 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Tsu01g04701 279 SUPERFAMILY beta-beta-alpha zinc fingers 103 178 IPR036236 -
Tsu01g04701 279 Pfam C2H2-type zinc finger 156 180 - -
Tsu01g04701 279 Pfam C2H2-type zinc finger 103 127 - -
Tsu01g04701 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 178 IPR013087 -
Tsu01g04701 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Tsu01g04701 279 MobiDBLite consensus disorder prediction 1 50 - -
Tsu01g04701 279 MobiDBLite consensus disorder prediction 1 24 - -
Tsu01g04701 279 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 270 IPR044653 GO:0003700
Tsu01g04701 279 MobiDBLite consensus disorder prediction 254 279 - -
Tsu01g04701 279 SMART c2h2final6 156 178 IPR013087 -
Tsu01g04701 279 SMART c2h2final6 103 125 IPR013087 -
Tsu01g04701 279 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04701 Tsu-Chr1 54326646 54327928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04701 3 268 C2H2 Transcription Factor Family AT1G27730 41.877 1.89e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04701 zf-C2H2_6 1.4e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04701 01 54326646 54327928 Tsu01g04701 01 54326646 54327928 ECH
Tsu01g00451 01 3837368 3838700 Tsu01g04701 01 54326646 54327928 ECH
Tsu07g00895 07 7314783 7316381 Tsu01g04701 01 54326646 54327928 ECH