Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04079 ATGAGTGAAGAATGTGGTGGTAACACTATTGCTACATCTACTACACCATTAAATTGGTGGTATcttcaagcttcaaattctcTTTCTTCTAATTGGAATGATGTTAATAAACATGCATGGAATAACCAAATAAATAATCccaattcttcatcttcttgtgAGGAACAAGATATATCTGTTTCTTCTACATCATTCACTaatgcttccaatcattcaagtCTCACTGTTGAATCATCTCGAAGAGTATTCGTTGAGCCGCATGCACCTCCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTTTGGAGTCATGTTCTATCTGGTGTTGGATCAAACGGAGAATTACACAACAACCAAGAAATTGGAGAGAATTTCTTAGATGGACTTACATCAAAAACTATGTTTGACCAACCAGCTTGTGATTATTTGAAGAAACTTGATACAACAAATTGGGAATATACAAATGGTTCAACTTCATTCAACACAAGTTTTGAGAAGCACTTAAATGGATATAGTGAAGCTCtaattgaaaataatgaaaggTTGACAAAATTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAATAATATGTCAAATAATTTGAATAATTCTTCATCCAATATGGATAATCACTTTGAATCCGACCCTAATTGTCATTTCAAACAATTACCTTTTGAAGATTCAACATCATGTACTATTGGAGGAGTAGGTAATAAAATGTTCCCTAATTTTCATGATCAAGACATGAACAATAAGGTTAAACAAGAAtataatcatcatcaacatgCAAGTGAAGTGATGCAACATGGACATGTATTTGGAAAATCATTTAATCCAAATGGTTATCTTGATGGATTCAATAGTAGACTTAATTCAATGGGAGATAACAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGTACAAAAAATTTCTCAGATGTTATATCCTTTAATAGTAGGCTTGGAAGACCAATTCTTGGAATCCATGCACAAAGGCCTAGCATGAAATACTCAAATTTATCTGAGTTAAAGAAGCAAGGTCTTCAGACACCATCACATATGAGAAATAATAATGGAAGAGTAGAGGGGACAACACgtgaaacaaagaagaaaagatCTGAAGAATCATCAGAAGCAAGTTTGAAGAAACCTAAACAAGACACATCAACAACAAATTCATCTTCAAAgGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTAAGCAACCCTTACTTGAAGGCAAATTCCCACAAGGACCCAAGGGGAATCTACTTCGATAGAAAAGATAAGGAAGATGCAAAGATAGATCTTGGAAGCAGAGGTCTATGTTTAGTTCCAACTTCATGTACACCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGtataggtaa 1602 0.3315 MSEECGGNTIATSTTPLNWWYLQASNSLSSNWNDVNKHAWNNQINNPNSSSSCEEQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDGLTSKTMFDQPACDYLKKLDTTNWEYTNGSTSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNNMSNNLNNSSSNMDNHFESDPNCHFKQLPFEDSTSCTIGGVGNKMFPNFHDQDMNNKVKQEYNHHQHASEVMQHGHVFGKSFNPNGYLDGFNSRLNSMGDNNGKFYQGLPNISPCTKNFSDVISFNSRLGRPILGIHAQRPSMKYSNLSELKKQGLQTPSHMRNNNGRVEGTTRETKKKRSEESSEASLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGIYFDRKDKEDAKIDLGSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04079 533 MobiDBLite consensus disorder prediction 406 422 - -
Tsu01g04079 533 CDD bHLH_AtbHLH_like 426 468 IPR045239 -
Tsu01g04079 533 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 519 - -
Tsu01g04079 533 MobiDBLite consensus disorder prediction 368 423 - -
Tsu01g04079 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 475 IPR036638 GO:0046983
Tsu01g04079 533 MobiDBLite consensus disorder prediction 368 382 - -
Tsu01g04079 533 MobiDBLite consensus disorder prediction 383 405 - -
Tsu01g04079 533 PANTHER TRANSCRIPTION FACTOR BHLH111 33 519 - -
Tsu01g04079 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 411 460 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04079 Tsu-Chr1 48667089 48672203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04079 331 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 43.478 8.18e-35 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04079 01 48667089 48672203 Tsu01g04079 01 48667089 48672203 ECH