Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04072 ATGACAGATACTACAGATGATATTGCTGAAGAAATCTCCTTTCAAAGCTTTGATGATGATTGTAGATTACTTGGTAATCTTCTCAATGACATTCTTCATCGTGAAGTTGGTACCACCTTTGTTGACAAACTTGAAAGAATTCGAGTTCTTGctcagAGTGCTTGTAATATGAGACAAGCTGGTATTGTGAACATGGCTGAGTTACTTGAGAAGCAATTGGCTTCAGAGTTGTCAAAGATGACACTTCAAGAAGCTTTTACTCTTGCTCGTGCTTTCAGTCATTATCTTACTATGATGGGTATAGCTGAAACTCACCATAGGGTGCGTAAAGGAGGGAATATGGCACAAATTTCTAAATCTTGTGATGATGTATTTAACCAGCTTGTGCAGGGTGGAGTTTCCCCTGATGATCTTTACAACACTGTGTGCAAGCAGGAGGTTGAGATTGTTCTTACAGCTCATCCCACACAAATTAACCGCCGTACGCTGCAGTACAAACACATTCGGATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCCTGAAGATAGAGAAATGCTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCCAAAAACCTACTCCAGTTGATGAAGCTAGAGCTGGTTTGAATATAGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTGCGCCGAGTCAGCAATGCTTTAAAGAAGCATACGGGAAAGCCACTTCCACTGACTTGCACTCCCATAAAGTTTGGAACTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTGACGGCAAAGGTTACAAAAGATGTTTCACTTCTATCTAGATGGATGGCAATTGATCTCTATATTCGCGAAGTGGATAGCCTCAGATTTGAGCTATCTATGAATCGATGCAGTGATACTTTGTCAAGACTGGCACATGAAATCCTGGAAGAAGTTAAGGATGAGAATCGCCACGAGAGTTGGAATCAATCCATGAATAGAAGTCAGTCACTTCCAACGCAACTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGCAAATGGTGAATCTCAGCATCCTAGACTAGACATCCCGGGACCTGATCACAAGgATGGTGGGACTCCAAGTTCATCTACACTCGGAAATGGCAATCCTACTTCTCCTTCTTTCAACTCCAGTCAACCATTTTCTCAGAGGAAATtgttgacagaaactcagacaGGAAAGTCCAGTTTTCAGAAGCTTTTAGAGCCACAGCTCCCTCAACTTCCTGGAATTGCTCCTTATAGAGTTGTCTTGGGAAATGTAAAGGACAAGCTTGAGAGAAGCCGTAGACGGTTAGAACTTCTTCTCGAGGATGTTGCATGTGATTATCATCCTTTGGATTATTATGAAACAGCTGAGCAGCTTTTGGAACCTCTACTTCTTTGTTATGAATCTCTGCAATCATGTGGTTCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTCATTCGTAGAGTTGCTACCTTTGGAATGGTTTTAATGAAGCTTGACTTGCGCCAGGAATCAGGGAGACATGCTGAAACACTTGATGCGATTACAATGTATTTGGATATGGGTACTTACAGTGAATGGGATGAAGAAAAGAAACTGGATTTCTTAACAAGAGAGCTCAAAGGGAAGAGGCCACTAGTTCCTGTTAATATGGAGttttcttcgGATGTTAAAGAAGTCTTGGATACATTCCGAATTGCTGCTGAGCTAGGGAGTGATTCCCTTGGAGCCTATGTGATCTCTATGGCCTCAAGTGCAAGTGATGTCCTTGCAGTAGAGCTTTTTCAGAAGGATGCACGACTTGCTGCTATTGGAGAGTTGGGAAGAGCATGTCCTGGTGGAACGTTGCGAGTTGTCCCTCTATTTGAAACCGTGAAGGACCTAAGAGGAGCTGGTTCAGTTATCCGAAAACTTTTATCAATAGACTGGTACCGTGAACACATCATTAAGAACCACAATGGACATCAAGAGGTTATGGTTGGATATTCTGATTCTGGTAAAGACGCTGGCCGCTTCACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGTATTAAAGTTACACTGTTTCATGGCCGTGGAGGCAGTATTGGTCGAGGTGGTGGCCCTACATATCTGGCTATTCAGTCCCAACCACCTGGGTCTGTGATGGGAACACTTCGGTCAACTGAGCAGGGAGAAATGGTAGAGGCCAAGTTTGGGTTACCACAGATAGCTGTTAGACAACTTGAAATATACACAACCGCAGTACTACTTGCAACTCTTCGTCCACCACTCCCACCCCGAGATGAAAATTGGCGTAATCTCATGGAAGAAATCTCAGAGATCAGTTGCCAGTGTTACCGCAACGTAGTCTACGAAAATCCACAGTTCCTTTCCTACTTCCACGAAGCCACGCCCGAAGCAGAACTCGGCTTCCTCAACATAGGTAGCCGTCCTGCAAGAAGGAAGAACACAAGGGGAATTGGACACCTACGTGCTATTCCCTGGGTATTTGCATGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTCGGAGTCGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGTCACAGTGAAGAACTAAAAGCAATGTACAAAGAATGGCCCTTCTTTCAAAGCACAATAGACCTTATTGAGATGGTTTTAGGGAAAGCAGACACTACTATAGCAAAATACTATGATGAAGCCCTTGTGTCAGAGGAGAGGCAAGAACTCGGCCGCGAGCTAAGAAACGAGCTCTTGACAGCTGAAAAGTTTGTGCTGGTGATTAGTGGCCATGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGTTGGTTGAGAACAGACTTCCATTTCTCAATCCAATGAACCTGTTGCAAGTGGAGATTCTCAAGAGGTTAAGGCGCGATGATGACAACCTTAAACTCAGAGATGCTTTGCTTATCACTGTAAATGGGATTGCTGCTGGGATGAGGAATACCGGTTAA 3060 0.434 MTDTTDDIAEEISFQSFDDDCRLLGNLLNDILHREVGTTFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASELSKMTLQEAFTLARAFSHYLTMMGIAETHHRVRKGGNMAQISKSCDDVFNQLVQGGVSPDDLYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSPEDREMLIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGTWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDTLSRLAHEILEEVKDENRHESWNQSMNRSQSLPTQLPARAHLPSFAANGESQHPRLDIPGPDHKDGGTPSSSTLGNGNPTSPSFNSSQPFSQRKLLTETQTGKSSFQKLLEPQLPQLPGIAPYRVVLGNVKDKLERSRRRLELLLEDVACDYHPLDYYETAEQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAITMYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVNMEFSSDVKEVLDTFRIAAELGSDSLGAYVISMASSASDVLAVELFQKDARLAAIGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQIAVRQLEIYTTAVLLATLRPPLPPRDENWRNLMEEISEISCQCYRNVVYENPQFLSYFHEATPEAELGFLNIGSRPARRKNTRGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLKGACEKGHSEELKAMYKEWPFFQSTIDLIEMVLGKADTTIAKYYDEALVSEERQELGRELRNELLTAEKFVLVISGHEKLQQNNRSLRRLVENRLPFLNPMNLLQVEILKRLRRDDDNLKLRDALLITVNGIAAGMRNTG 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04072 1019 Gene3D Phosphoenolpyruvate/pyruvate domain 395 513 - -
Tsu01g04072 1019 Gene3D Phosphoenolpyruvate/pyruvate domain 289 368 - -
Tsu01g04072 1019 MobiDBLite consensus disorder prediction 379 403 - -
Tsu01g04072 1019 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 677 689 IPR033129 -
Tsu01g04072 1019 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1019 - -
Tsu01g04072 1019 PRINTS Phosphoenolpyruvate carboxylase signature 850 876 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 19 1019 IPR015813 GO:0003824
Tsu01g04072 1019 MobiDBLite consensus disorder prediction 361 403 - -
Tsu01g04072 1019 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1019 IPR022805 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 Pfam Phosphoenolpyruvate carboxylase 19 329 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 Pfam Phosphoenolpyruvate carboxylase 410 1019 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1019 IPR021135 GO:0006099|GO:0008964|GO:0015977
Tsu01g04072 1019 Coils Coil 440 464 - -
Tsu01g04072 1019 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04072 Tsu-Chr1 48591283 48598955 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04072 01 48591283 48598955 Tsu01g04072 01 48591283 48598955 ECH