Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04058 ATGATACAAGAAGATCAAGGACAGTGTTCTTCACAAACAATCAATAACTTTGAAACCTATCAAGAACAGTTTCTCCTTCAACAACAGATCATGAGACAACAACAAAacactttctctttcccttCATCAGGTGATAATCAAGTTTCACCAATCTTTCAACAACCATGGTCTATGCAACAACttcatcatcatgttcatgACCCTTTTGTTATTCCTCAACAACAAACTTCATCATCACCATATGCAAATTTGTTCAATAGATCATCAAGAGTTCCTTCTCTTCAATTTGCAtatgatcatcatcatcatggtTCTGAACATCTTAGAATCATATCAGATACTCTTCAACATGGATCAGGTGTACCTTTTGGTGGTCTTCATCAAAGTGAACTTGGAAAAATGAGTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCTGCTTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGCAGAGAAAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTACCAAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTAAAAGAATTGAAACGTCAAACATCACTAATAGCAGAAACAAGTCCAGTTCCAACTGAATGTGATGAATTAACAGTAGATGCTGCTGGaactgatgatgatgaagaatatggATCAAATTATggaaacaaatttataataaaagcTTCACTTTGTTGTGATGATAGATCAGATCTTTTACCTGAACTTATCAAAACATTGAAAGCATTAAGGTTAAGAACACTTAAAGCTGATATAACAACACTTGGTGGTCGTGTTAAGAATGTTTTGTTCATTActggtgaagaagatgatcaTGAATATTGCATTAGTTCAATACAAGAAGCATTGAAAGCTGTTATGGAGAAAAGTGTTGGTGATGATTCTGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCAATATCTAATtag 993 0.3061 MIQEDQGQCSSQTINNFETYQEQFLLQQQIMRQQQNTFSFPSSGDNQVSPIFQQPWSMQQLHHHVHDPFVIPQQQTSSSPYANLFNRSSRVPSLQFAYDHHHHGSEHLRIISDTLQHGSGVPFGGLHQSELGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTECDELTVDAAGTDDDEEYGSNYGNKFIIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEDDHEYCISSIQEALKAVMEKSVGDDSASGSVKRQRTNIISISN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04058 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 202 IPR036638 GO:0046983
Tsu01g04058 330 CDD bHLH_AtAIG1_like 141 219 - -
Tsu01g04058 330 PANTHER TRANSCRIPTION FACTOR BHLH30 57 328 IPR045847 GO:0003700|GO:0006355
Tsu01g04058 330 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Tsu01g04058 330 Gene3D - 141 202 IPR036638 GO:0046983
Tsu01g04058 330 SMART finulus 152 201 IPR011598 GO:0046983
Tsu01g04058 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Tsu01g04058 330 PANTHER TRANSCRIPTION FACTOR BHLH30 57 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04058 Tsu-Chr1 48452058 48454847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04058 81 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 65.314 1.36e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g04058 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04058 01 48452058 48454847 Tsu01g04058 01 48452058 48454847 ECH