Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04057 ATGCTGGTTCGAAGAAGAGTGATGAGTTGGAGAAGGGTAGCTAAATCCCTTCAAGCTATGTTAGCTCATTCCTTTCTTTTCTCCTTCactcttcttcttgttctcaaccTTGATCGTTTCTTCCTTTTCTCATGGTGGACCGTATTTTTGCCTCTTTGGCTGTTTCATGTGGTTGTAGCACGAGGCAGGTTTTCCATGCCTGCTCCTTCAATGCCTCATGATCGCCAATGGGCACTTTGTCATTCAGTTATAGCAACACCATTACTTGTGGCTCTTGAGCTTCTTCTGTGTATACATCTTGGTAGCAGTTATGTGGTGAATTTGAAGATTGTATTCATACCCCTTATAGCTTTTGAATTGGTGATTTTGATCGATAACATCAGGATGTGCAGGGCTTTGATGCCTGGAGACGAAGAAAATATGACAGATGAAGCGGTATGGGAAACTCTTCCTCATTTATGGATTTCGATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTTGGCTGGTGGGACTTGTTTATAAATTATAGTATTGCACAGTGCTTTGCGTTTCTCGATATAGGCGGACATATAATGAAAATTCCATTCATTGCTTTCCAAATACTACTTTTTATGCATTTAGAGGGAACACCATCGGGTGCAAAAGATATACCAATTTGGGTAATTTTTTCTCCGCTTCTACTGTTACAAGGAGCTGGAGTATTATTTGCAGCATATAGATTAATAGAGAAGATTGTTCTTTTACTCCATCATTGGGATCTTCCTAGGAGCTACTCATCTATAGCATCAAAATCCCGTGACTGCTTTGGATTTTTTCATCATGGATCAAGGTTGTTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAATCTAGACTTTTCTGTGCCGGGAGTTCTGGGTATAATACTTTCTCCCCCGATACAGTGAAGAAAATGCCTAGAGGGGAACTTGTTGAGGAGATTTGGAGACTTCAAGATGCACTTCGTGAGCAGACAGAAGTTACAAAATATGGCCAGGAGGAATATGAAAAACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTCCTTCCCTGCAAGCATCACATTCTTTGCAGCACCTGCTGCGAAAAATGCAAGAAGTGCCCTATCTGCCGTGGAACCATTGAAGAACGGATGCCTGTATATGATGTGTAG 1245 0.4048 MLVRRRVMSWRRVAKSLQAMLAHSFLFSFTLLLVLNLDRFFLFSWWTVFLPLWLFHVVVARGRFSMPAPSMPHDRQWALCHSVIATPLLVALELLLCIHLGSSYVVNLKIVFIPLIAFELVILIDNIRMCRALMPGDEENMTDEAVWETLPHLWISISMVFFIAATVFTLLKICGDVAALGWWDLFINYSIAQCFAFLDIGGHIMKIPFIAFQILLFMHLEGTPSGAKDIPIWVIFSPLLLLQGAGVLFAAYRLIEKIVLLLHHWDLPRSYSSIASKSRDCFGFFHHGSRLLGWWSIDEGSREEESRLFCAGSSGYNTFSPDTVKKMPRGELVEEIWRLQDALREQTEVTKYGQEEYEKLQNEKILCRVCFEEQINVVLLPCKHHILCSTCCEKCKKCPICRGTIEERMPVYDV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04057 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 413 IPR013083 -
Tsu01g04057 414 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 199 414 - -
Tsu01g04057 414 Pfam Zinc finger, C3HC4 type (RING finger) 365 407 - -
Tsu01g04057 414 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 198 - -
Tsu01g04057 414 ProSiteProfiles Zinc finger RING-type profile. 367 402 IPR001841 -
Tsu01g04057 414 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 198 - -
Tsu01g04057 414 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 199 414 - -
Tsu01g04057 414 Pfam Transmembrane Fragile-X-F protein 35 198 IPR019396 -
Tsu01g04057 414 Pfam Transmembrane Fragile-X-F protein 203 242 IPR019396 -
Tsu01g04057 414 SUPERFAMILY RING/U-box 358 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04057 Tsu-Chr1 48438799 48444774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04057 8 414 C3H Transcription Factor Family AT1G73950 64.384 0.0 575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04057 01 48438799 48444774 Tsu01g04057 01 48438799 48444774 ECH