Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04054 ATGATTGTGTTAAGATCCTTGATCCTGAGCAAATTGCAATCAATTAGCGTATCGTGGTTGGTCGACAAAAAAACAATTGCAACGAGAATAAAGTATGCATCAACAGCAACAGCTGAAGTTCATTTCGAAAGCAACCCTTGCATATCTTGCCCGAATTGTCATCATGTTATTGACAATAACAATTTAAAACAACAGTTTCCTGGATTACCAAAAGGTGTTAAATTTGATCCATCAGATCAAGACGTAATGTCGCATTTGCTTGCGAAAGTTGGTGCAGGAGATTCCGAACCGCACCCTTTCATCGATGAATTTATCACTACAATAGAAGAGGATAATGGTATTTGCTATACTCATCCTCAACATTTACCAGgtgTTTCACAGGACGGAAGTGTGGcgcatttttttttccacaaagcGGTCAAAGCTTATAGCTCCGGCGGTCGAAAGCGTAGAAGACTATTTGATCAAGATTTCGGTGAGCTACGTTGGCACAAGACTGGGAAGACCAGGCGTATTTTCTTGGACGGAATTCAAAAAGGTTGTAAGAAGATTATGGTCCTCTATACTACACCGTCAAATGGAGAAAAAGCTGAGAAGACCAATTGGATTGTTCATCAATACCACCTTGGACGAGAAGAGGACGAAAAGGAGGGAGAATATGTggtttcaaaaatattttaccagCAGCAGCAGCCAGTGAAATTAGGTAAAAAAGATGATAAAGATGTTCCTGAAACCAGTGGTGAAGCAAGTATTGCAAGAGTTGTGGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCCTTGTGACAAAAAACAATGCTCAGATGTGAATCAAGAACAAGAATCTCAACAAGAACCTCAGCATATTTCTGAGATTTTACCAAATGTTCATCAATGGCTACTTGATACTCAGAATGACCGTGAAGAATGCTCAAATGTGAACCAAGAACAAGAATCTCATCATATGAATCAAGAACAAGAACCCCATCAAATGAATCAAGAGCAAGAACCTCATCATTTTTCTCAgATTTTACCAAATATTCCTCAATGGCTACTTGATAGTCCTGATGACCATGGAGAGCTTCCAAACATTGACCAGTTGATGGTTGAATCTCAAAATATTGAAGGGATTGATGACATTGACCTTTCTTTGAATCTATTTTCTTCACAACAATTTGCAGGAGAATCCCCCTTCATGTTTCATTTCCTTCCAAGCCAGTCTCCCAAAAGGAATGTGGATCAACCTAGTCTTTCTGGATCTGCTCATCTTGGAGAGCAATCGCAGAAAGACATTGAAGAGTGTCAAAATCCTAATTTTGACACTACGAAGAACAATGTTGGAGAGTGTCAAAATTTGGACCCTGACACTGGAAATGTTAACCTTGACCCTCAACCGTCGGATTTTAATTTAAGTCATCTGGACTTTAGCTCACAAGACAGCTACACTGCTTGGGGAGGTAGCATTAACAATACATTCAAGTAA 1488 0.3831 MIVLRSLILSKLQSISVSWLVDKKTIATRIKYASTATAEVHFESNPCISCPNCHHVIDNNNLKQQFPGLPKGVKFDPSDQDVMSHLLAKVGAGDSEPHPFIDEFITTIEEDNGICYTHPQHLPGVSQDGSVAHFFFHKAVKAYSSGGRKRRRLFDQDFGELRWHKTGKTRRIFLDGIQKGCKKIMVLYTTPSNGEKAEKTNWIVHQYHLGREEDEKEGEYVVSKIFYQQQQPVKLGKKDDKDVPETSGEASIARVVDPVTPNFVTPELPCDKKQCSDVNQEQESQQEPQHISEILPNVHQWLLDTQNDREECSNVNQEQESHHMNQEQEPHQMNQEQEPHHFSQILPNIPQWLLDSPDDHGELPNIDQLMVESQNIEGIDDIDLSLNLFSSQQFAGESPFMFHFLPSQSPKRNVDQPSLSGSAHLGEQSQKDIEECQNPNFDTTKNNVGECQNLDPDTGNVNLDPQPSDFNLSHLDFSSQDSYTAWGGSINNTFK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04054 495 Pfam No apical meristem (NAM) protein 70 209 IPR003441 GO:0003677|GO:0006355
Tsu01g04054 495 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 17 487 - -
Tsu01g04054 495 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 17 487 IPR044799 GO:0003700
Tsu01g04054 495 MobiDBLite consensus disorder prediction 409 429 - -
Tsu01g04054 495 ProSiteProfiles NAC domain profile. 69 228 IPR003441 GO:0003677|GO:0006355
Tsu01g04054 495 SUPERFAMILY NAC domain 54 228 IPR036093 GO:0003677|GO:0006355
Tsu01g04054 495 Gene3D NAC domain 78 233 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04054 Tsu-Chr1 48409515 48413513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04054 45 241 NAC Transcription Factor Family AT1G28470 52.709 1.77e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g04054 NAM 1e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04054 01 48409515 48413513 Tsu01g04054 01 48409515 48413513 ECH