Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04051 ATGGAATTAGGAGGTAGTTGCATAGATGAAACAACCACCaccgccaccaccaccaccaccgcaACCACAAGCAATGACTCTCTTTCAGTAACTCTCATTTCGGCAAAACTATCACCACCGCCGACGACAAATACACTAAGCCGCGTCGGCAGTGGTGCTAGTGCCGTCGTGGATCCCGAAATCTGCGGCGGATCCGGTGAAGCTGAGTCTCGTAAACTTCCATCATCGAAATATAAAGGTGTTGTTCCACAACCAAACGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGCGTATGGTTAGGTACGttcaatgaagaagatgaagctgCAAGAGCTTACGATATCGCCGCTTTGAGATTTCGCGGAAAAGACGCTGTTACAAATTCTAAAACTCTCGCCGGCGTAAATAACGATACCGATGAAGCTGAAGCTGAGTTTCTAAACTCACATTCCAAATCTGAGATCGTTGATATGTTAAGAAAACATACCTACGACGATGAGCTTAAGCAGAGCATGCGTGACACTTGCGGCGGAAGACAGCGGCGTAACGGAGAATTATCTGGTGCAGCATCACGTGGCGCGTGTGATGCTAAAGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCAAGTGACGTTGGGAAATTGAATAGGTTAGTGATACCTAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTTGCTGTTACCGTCTCCGGTAACGGAATCTCGCCGTCAGTTGCGGCGGCGAAGGGTTTACTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAAAGTTACGTTCTAACCAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTACGAGCCGGTGATGCGGTTCGGTTTTTTAGATCGACCGGACCGGATAGACAGCTCTACATTGACTGTAAAGCAAGAAGCAGTAGTGTTGTCGGTGTTGGTATTGGTGAAGAAGTTGAAAGTAATAAAACCGGTGGTTTATTTATTTCGGTTCGACCGGTTGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTAGCTGCAAtgggaaaagaaaagaaatggaaTTATTTGCTTTAGAATGCAGCAAAAAACCAAAGATAATTGGAGCATTATAA 1194 0.4355 MELGGSCIDETTTTATTTTTATTSNDSLSVTLISAKLSPPPTTNTLSRVGSGASAVVDPEICGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKTLAGVNNDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDTCGGRQRRNGELSGAASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVTVSGNGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSSSVVGVGIGEEVESNKTGGLFISVRPVVEPVQMVRLFGVNLLKLPGSDGSCNGKRKEMELFALECSKKPKIIGAL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04051 397 SUPERFAMILY DNA-binding pseudobarrel domain 204 320 IPR015300 -
Tsu01g04051 397 SMART B3_2 206 321 IPR003340 GO:0003677
Tsu01g04051 397 SUPERFAMILY DNA-binding domain 76 130 IPR016177 GO:0003677
Tsu01g04051 397 ProSiteProfiles AP2/ERF domain profile. 77 132 IPR001471 GO:0003700|GO:0006355
Tsu01g04051 397 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 16 397 - -
Tsu01g04051 397 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Tsu01g04051 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 397 IPR044800 GO:0003700
Tsu01g04051 397 Gene3D - 195 327 IPR015300 -
Tsu01g04051 397 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Tsu01g04051 397 CDD B3_DNA 205 307 IPR003340 GO:0003677
Tsu01g04051 397 ProSiteProfiles B3 DNA-binding domain profile. 206 322 IPR003340 GO:0003677
Tsu01g04051 397 Pfam B3 DNA binding domain 206 312 IPR003340 GO:0003677
Tsu01g04051 397 CDD AP2 76 130 IPR001471 GO:0003700|GO:0006355
Tsu01g04051 397 SMART rav1_2 77 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04051 Tsu-Chr1 48349663 48351386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04051 6 397 B3 DNA Binding Superfamily AT1G25560 56.858 2.40e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Tsu01g04051 B3 2.3e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04051 01 48349663 48351386 Tsu01g04051 01 48349663 48351386 ECH