Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04050 ATGCAAactcatcataatcatcatcagtACTACTCATTATCTTGTGTGAGTACTAGTGAGAGTCTCTCCTGCAGCAGtatagaagatgaagattccATTTTCCTCTCTCTTGCCCCTCCTGGCCACCAACAAATACCACCTCCTCCCAAACTCACTACTATCCCTCCTCCCCTTCAACAAAACACTGTCTCTCCTCTTCATGACCATACTTTTGCTGTAAATGTAGCACTTTCCCCTCTTCTCCACATTTCCCTTAATCCTACTTCCACTTCCAAACCACCTCACACTCCCATTCCTCAATACTGGATCCCTTCTCCTTCTCAAATCCTTATTGGTCCTACTCAATTCTCCTGCTCTGTCTGCAATAAAACCTTCAACCGTTTCAACAACATGCAgATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCTGAATCTCTAAAAGGGTCAAAACcaacatcatcatcttcatcaatgtTGAAACTACCCTGCTATTGTTGTGCTGAGGGttgcaaaaacaacataaacTATCCAAGATCAAGACCACTGAAAGATTTCAGGACACTTCAAACACACTACAAGAGGAAACACGGAGGGAAATCATTCGAGTGCAGGAAGTGTAGGAAGCCATTTGCTGTGAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGCAAGCTTTGGTTCTGTATCTGTGGTTCTgattttaaacataaaagatCACTTAAAGATCATGTTCGTGCTTTCGGTAATGGCCATGCTCCACATACATTGGAATCTTTGAGCTTTGATCATGAATATAAAGCTAATGAAAATttcaaggaagaagaagaaagtggaagtgaagatcaagaagaagaagataataataGTGAAGTTGCTTTTACTTTCAACTAA 903 0.3522 MQTHHNHHQYYSLSCVSTSESLSCSSIEDEDSIFLSLAPPGHQQIPPPPKLTTIPPPLQQNTVSPLHDHTFAVNVALSPLLHISLNPTSTSKPPHTPIPQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGSKPTSSSSSMLKLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDHEYKANENFKEEEESGSEDQEEEDNNSEVAFTFN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04050 300 MobiDBLite consensus disorder prediction 273 300 - -
Tsu01g04050 300 MobiDBLite consensus disorder prediction 278 292 - -
Tsu01g04050 300 PANTHER ZINC FINGER PROTEIN WIP2 11 294 IPR043584 GO:0003700|GO:0010468
Tsu01g04050 300 SMART c2h2final6 167 199 IPR013087 -
Tsu01g04050 300 SMART c2h2final6 204 224 IPR013087 -
Tsu01g04050 300 SMART c2h2final6 116 138 IPR013087 -
Tsu01g04050 300 SUPERFAMILY beta-beta-alpha zinc fingers 93 137 IPR036236 -
Tsu01g04050 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Tsu01g04050 300 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Tsu01g04050 300 PANTHER ZINC FINGER PROTEIN WIP6 11 294 - -
Tsu01g04050 300 Gene3D Classic Zinc Finger 115 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04050 Tsu-Chr1 48337846 48339155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04050 29 260 C2H2 Transcription Factor Family AT1G13290 68.220 9.44e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04050 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04050 01 48337846 48339155 Tsu01g04050 01 48337846 48339155 ECH