Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04049 ATGTTTTCTACCTTCACAATGCAGCGTTTTAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAAGAAGAACGACGTAAGATTCAAGTTTTTCCAAAAGAACTACCTCTTTCTTTAGAACTCGTTACACAAgCTATTGAAGCTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAACAATCTGAGTGTTCTGAACAGACAACAACATCAACAGATGGACCTGTTTTGGAAGAGTTTATTCCAATTAAGAAAAGGGCTTCACCTTATTGTGAACAagtttatgatgatgatgaagaagaagataatgAACAACATTCTCATCATAAGCAACAAAAGATTTCAATGGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCTCCTTCTCATGAGGATGTTACTAGGAAAGTGGTGCCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCattccaaaaagaagaaagagttaACAATAATAAGACATGTGAATTGTTGAGTAAAGTACAACCCTCTTCGACCGGTGTAGCTGCTGCGAGTTCTAATGTGGCTACTGTCACCAGTAACAATGCTGCAAACAGCAAAAGAGATGAGAAAGAGGAAAAGAGAAAGCAACGCCGGTGCTGGTCGCAGGACTTGCATAAGCGCTTCTTACAGGCACTTCAACAACTTGGAGGTGCAGATTCTGCAACACCAAAGCAAATTAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACAAGAAGACCAAGTCCGTCAAACAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACAACAACAAGAGTATGGTGGGGTagcatcatcaacaacatcagGGGAAATGACAAAGGTTGTAGCACCTTCTGGAATCTATGCACCAGTAGCAACACATCCTCCTCCTCCAGCCGCAACAATTAAGAAGCCAGAGTTTAAGAAATTTGAGCATTCAATCTCAGAAGATAGGGCTAATAATAATAGTGAAGGTGACTGTTACCATGGTATCTCCTTAGAACAAGGTGGCTTCTGA 1149 0.3768 MFSTFTMQRFKMGFSDYIQALEEERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQQSECSEQTTTSTDGPVLEEFIPIKKRASPYCEQVYDDDEEEDNEQHSHHKQQKISMDKKKSDWLRSVQLWNPDPPSHEDVTRKVVPVLELKRNGSGGGAFHPFQKEERVNNNKTCELLSKVQPSSTGVAAASSNVATVTSNNAANSKRDEKEEKRKQRRCWSQDLHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPSNNESANSQTAAPFVLVGNIFVQQQQEYGGVASSTTSGEMTKVVAPSGIYAPVATHPPPPAATIKKPEFKKFEHSISEDRANNNSEGDCYHGISLEQGGF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04049 382 Gene3D - 220 278 - -
Tsu01g04049 382 MobiDBLite consensus disorder prediction 101 124 - -
Tsu01g04049 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 278 IPR017930 -
Tsu01g04049 382 MobiDBLite consensus disorder prediction 197 225 - -
Tsu01g04049 382 SUPERFAMILY Homeodomain-like 219 279 IPR009057 -
Tsu01g04049 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 221 276 IPR006447 GO:0003677
Tsu01g04049 382 MobiDBLite consensus disorder prediction 357 382 - -
Tsu01g04049 382 MobiDBLite consensus disorder prediction 210 225 - -
Tsu01g04049 382 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 369 - -
Tsu01g04049 382 MobiDBLite consensus disorder prediction 107 124 - -
Tsu01g04049 382 Pfam Myb-like DNA-binding domain 223 274 IPR001005 -
Tsu01g04049 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 369 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04049 Tsu-Chr1 48322886 48325313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04049 16 341 G2-like Transcription Factor Family AT1G68670 47.368 8.20e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g04049 Myb_DNA-binding 9.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04049 01 48322886 48325313 Tsu01g04049 01 48322886 48325313 ECH