Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03205 ATGAATACAGCTCAGTGGCCtcagGAGATTATGGTGAAGccaatagtaacaacaaataaTCATGTGTTGGAAAAGAAGCCAAAGCCAAAAAAAGAACAAGCTATAAACTGTCCAAGGTGTAATTCAATAAACACAAAATTTTGTTACTACAACAATTATAGCTTAACACAACCAAGATATTTTTGCAAAACATGTAGAAGATATTGGACTCAAGGTGGATCTATAAGAAACATTCCTGTTGGTGGTGGttcaagaaaaaacaaaagatcttcATCTTCCAATTCTTCACTTTCAACAAAAAACCTAcatgatcatgatcatgatTTTGTTGGTCTTACACCACAAAATAAGATCCATCATGAAGATCAAGGACAAGATCTAAATTTGTCTTTTCCTTCAATAGCACCACTAAGATCTAGTGAATTGGTTCAACAAACTTCAACTTCTAATCATTTTTCAGCATTGGAGCTTATTAGTGGGATAACAACTTCAAGTAGTTCTTCAAGGGGTTTAGGTTTACAATATCCTTTTATGCCTCTTCAACTTCAAGGTGGATTTCCTCTACAAGATTTTAAGCAAGTGCCAATGAGTTTTTGTTTAGATGGAATTAATGGAGGAAGTGGATTTTCAAGTGGTGTTCAAGAGATAAGTGAAGGAAAAGTTTTGTTTccttttgaggatttaaaacaAGTTTCAAGTACTAATAATAATCCAACATTGGATTTGGATCAGAATAATATTAAGGAGGATCAACAAGGTTATTCAACTGGGATTTGGACTCGAATGTTGGGAGGAGGAGGATCATGGTAG 810 0.3123 MNTAQWPQEIMVKPIVTTNNHVLEKKPKPKKEQAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNKRSSSSNSSLSTKNLHDHDHDFVGLTPQNKIHHEDQGQDLNLSFPSIAPLRSSELVQQTSTSNHFSALELISGITTSSSSSRGLGLQYPFMPLQLQGGFPLQDFKQVPMSFCLDGINGGSGFSSGVQEISEGKVLFPFEDLKQVSSTNNNPTLDLDQNNIKEDQQGYSTGIWTRMLGGGGSW 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03205 269 MobiDBLite consensus disorder prediction 84 99 - -
Tsu01g03205 269 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Tsu01g03205 269 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Tsu01g03205 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 1 263 - -
Tsu01g03205 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 263 IPR045174 GO:0003700|GO:0006355
Tsu01g03205 269 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Tsu01g03205 269 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03205 Tsu-Chr1 39582287 39583652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03205 1 269 C2C2-Dof Transcription Factor Family AT4G24060 38.484 2.30e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu01g03205 zf-Dof 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03205 - - mtr:MTR_1g077600 324.324