Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01315 ATGATGGAAAGGGAAAATTGGAGCGAAAATACCAATGGGTATTATGGGAATCAATTATTGCGTGATTATGATCGAGATTCAGTTATGATAAATTCTTCTTTGTCACCATCTCCACCAAGACTCGGTTACATTGAACATCGTGTATCAAAATTTGATACTTTGGTTGGCATTGCAATCAAATATGGTGTTGagGTTACAGACATCAAGAGGATGAATAGTCTTATTACAGACCAACAGATGTTTGCGCTTAAAACAGTTCAAATTCCATTACCTGGAAGGCATCCTCCATCTCCTTGTTTATCAAATGGTTCAACTACTCCAGGGAATGGTAACTCCACTCTCAGACCACCTGATATTGCGAGCCGTGAACTGCTTGAATCATTTCAGTCCATAAAATTAAGGTCTCATGACCGGAAGGTTTCCCCTGCCATGAGTTCATTACAGGGTTATTATGGACTTCAAGCGCTCTCTAATTCTTCAGAAGACGATCCATCCATGTATGGACGGCCCCTGAGTCGTCACCGAAAGTCCAGAAGTTTGGTCAATGTAATTATGCAAGAGATTATGGATAAGGATGATACttcatcagccgcagaaaccTGCGAACATAGCTCTGATAAATGGAATGACAAGTTTGCCCAGAGGCGTCAGAAATCTGTAGCTGACTTTACCAGGATACCGGAGTTGATTCTGAGGGAGGATAATAGCAGCAGTGGTGCCCTTCCTTCAAGAACAGGAAAGGGCTTAGCTTTGAGACAGAAAGCAGCTCGAAATGCAGCAGCAAATGATTCTGAATCAAGTTCACCTGTGGCAATGGTTACGGGGGATGGTTTTCAAACTGATAGTTCATCTGGGGGTGTAAGGAAATCATCCAGTACATCGTGTTTGCAAGATCAGGATAACTGTGGTTCCTCATCCATTTGGCCATCCTCAATGTGGAAACCAGATTTACAAGCCCTTTCAACTGCAGCCATTGGAAAACCAATCTTTGATGGCTTGCCAAAGCCAGTAACTAGTCGAAAGAATAAAGCTGCACTTGATTAA 1044 0.4138 MMERENWSENTNGYYGNQLLRDYDRDSVMINSSLSPSPPRLGYIEHRVSKFDTLVGIAIKYGVEVTDIKRMNSLITDQQMFALKTVQIPLPGRHPPSPCLSNGSTTPGNGNSTLRPPDIASRELLESFQSIKLRSHDRKVSPAMSSLQGYYGLQALSNSSEDDPSMYGRPLSRHRKSRSLVNVIMQEIMDKDDTSSAAETCEHSSDKWNDKFAQRRQKSVADFTRIPELILREDNSSSGALPSRTGKGLALRQKAARNAAANDSESSSPVAMVTGDGFQTDSSSGGVRKSSSTSCLQDQDNCGSSSIWPSSMWKPDLQALSTAAIGKPIFDGLPKPVTSRKNKAALD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01315 347 ProSiteProfiles LysM domain profile. 44 88 IPR018392 -
Tsu01g01315 347 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 28 347 - -
Tsu01g01315 347 CDD LysM 44 88 IPR018392 -
Tsu01g01315 347 MobiDBLite consensus disorder prediction 235 310 - -
Tsu01g01315 347 PANTHER LOC443603 PROTEIN-RELATED 28 347 IPR045030 -
Tsu01g01315 347 SUPERFAMILY LysM domain 44 89 IPR036779 -
Tsu01g01315 347 SMART LysM_2 45 89 IPR018392 -
Tsu01g01315 347 MobiDBLite consensus disorder prediction 92 117 - -
Tsu01g01315 347 Gene3D LysM domain 31 95 IPR036779 -
Tsu01g01315 347 MobiDBLite consensus disorder prediction 98 116 - -
Tsu01g01315 347 MobiDBLite consensus disorder prediction 259 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01315 Tsu-Chr1 12444591 12447582 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01315 01 12444591 12447582 Tsu01g01315 01 12444591 12447582 ECH