Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01300 ATGGCAAATCAATCTGAATCCGAAGTCTGTGATAATGCAATTCAACCTccaaaaatttgCAAAAGGGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGACGAGGTTGTTGTAAAGCAAGAGAATGTGGAAGAAATTAATCAAGAGTGTTCTGAACATGATAATAAACTTGAAGCTGAAAATAAGAAGCAGAAGATAGATGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTGTTCTGAACATGATAATAAACTTGAAGCTGAAAATGAATCTGCTACTGGTTGTGATACTATGGAATCATTGGATGATGGTAGCTCAGATTCTGACTCACAAAGAAGCTCTGGTGAGGATAATCCTGAAGATTCAGAGAGTCCAGAGTACAACGAGGAAGAAATAGAGGAAAGAGTTTCCAAAACACCTCACGAAAGGCATGAAACCCCAGTCATGCTAAACGGAAAATATGCTGAATCGAAGACAATATTTGTTAGAAACCTGTCATATAGTGTGGAACGGACTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAACATAGATTCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTGAATTGGATAATACAGAATTATTGAATCGTCACATCAAAGTTAGTATAGCTCTAGAAAAGAGTGAATATGCCCCCTATAAAAGCAACTTGAGCAGCTCATTCCATAAGTGTGGAAATCTTCAATCTCACACTGTAAAGGGTTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCGAATGAAACAAATGGTGCATCAAAGACCGTATATGTCAGAAACTTGTCATACTCCGTGGAACGAGCTGATATggaaaatcttttcaaagattgtGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGCGAAGGGAAGTTTAAAGGCTATGGACACATTCAGTTTGCCACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTGAATAAGAGTGTATTTTTTAAGCGTCTTATGTTTGTTGGTTTAGCTCTGGAAAGGGGTAAATATTCCCCTAATAGAAGCTGGTCCTGGAGCAGCTCATTCCATAAGGATGAAAAAATTCAGTCTCAAACTGTACCTGTGAAGAGTTTTGATACATCCCTTGCAGAAGACAAaTTGACCTGTGCAAAGGAGGAGGTTAAAGATATAGAGATGTTTGATGCTGCCTCTGCTGAGAGTAAAGTTCCTGAAACCCCATCTAccataaaagagaaaaatgatgcaTCAAAAACAATATGTGTTAGAAATTTGTCATTTGATGTGGAACGGGCTGAAATtgaaaatattttcaaagatTGCGGAGAAGTTGTTGATGTCCGACTCCATGTGGATGTTGAGTTTACAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTAATGAACCGTCCCATCAAAGTTGGCACAGCTTCAGAAGAGGGTGAATGTTTCCCGAGTAGAGGTTTCCCTGAATACAATTTAAGCAGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATCCCTTCCAGAAGAGAagATAAAAGCTAGCCTGCATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCAATACCAAAATTTCATGATTCTGGTATTGTTAAGGGGTTTGCTCATTTGGACTTCAAGGATAGTGATGGCTATCAGAAAGCACTACGACTTGATCAAACTGCGATTGGAGATCATTGGTTGTCAGTTGAAAAAGCAAAGCCAAAGATAAGACGTGATTATCAGGGCATAGGTGGTGGCAGAGGTGGCTATTACGTTGGTGGTAGGGATGGAGGAGACCATGGCGGGAGAACTGGTTGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA 2037 0.3972 MANQSESEVCDNAIQPPKICKRECEDEDQEEVITKKQKRDEVVVKQENVEEINQECSEHDNKLEAENKKQKIDEVVVKQENEEEINPDCSEHDNKLEAENESATGCDTMESLDDGSSDSDSQRSSGEDNPEDSESPEYNEEEIEERVSKTPHERHETPVMLNGKYAESKTIFVRNLSYSVERTDMEDIFKDCGEVVDVRFNIDSEGRFRGFGHVEFGTAEAAQKALELDNTELLNRHIKVSIALEKSEYAPYKSNLSSSFHKCGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTVYVRNLSYSVERADMENLFKDCGEIVDVRLHTDREGKFKGYGHIQFATAEAAQKALALNKSVFFKRLMFVGLALERGKYSPNRSWSWSSSFHKDEKIQSQTVPVKSFDTSLAEDKLTCAKEEVKDIEMFDAASAESKVPETPSTIKEKNDASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFTTAEAAEKALELDNTRLMNRPIKVGTASEEGECFPSRGFPEYNLSSSSISFQKAESFQPLTVFVIGFDTSLPEEKIKASLHKHFCSCGEITRISIPKFHDSGIVKGFAHLDFKDSDGYQKALRLDQTAIGDHWLSVEKAKPKIRRDYQGIGGGRGGYYVGGRDGGDHGGRTGWGRSHGAGRHWTANTEHW 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01300 678 MobiDBLite consensus disorder prediction 77 155 - -
Tsu01g01300 678 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 73 383 - -
Tsu01g01300 678 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 543 663 - -
Tsu01g01300 678 MobiDBLite consensus disorder prediction 116 130 - -
Tsu01g01300 678 Gene3D - 89 253 IPR012677 -
Tsu01g01300 678 Gene3D - 264 382 IPR012677 -
Tsu01g01300 678 Gene3D - 387 520 IPR012677 -
Tsu01g01300 678 Gene3D - 536 667 IPR012677 -
Tsu01g01300 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 245 IPR000504 GO:0003723
Tsu01g01300 678 SUPERFAMILY RNA-binding domain, RBD 161 258 IPR035979 GO:0003676
Tsu01g01300 678 SUPERFAMILY RNA-binding domain, RBD 442 524 IPR035979 GO:0003676
Tsu01g01300 678 SUPERFAMILY RNA-binding domain, RBD 544 658 IPR035979 GO:0003676
Tsu01g01300 678 Coils Coil 35 82 - -
Tsu01g01300 678 MobiDBLite consensus disorder prediction 77 100 - -
Tsu01g01300 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 548 629 IPR000504 GO:0003723
Tsu01g01300 678 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 401 523 - -
Tsu01g01300 678 SUPERFAMILY RNA-binding domain, RBD 286 385 IPR035979 GO:0003676
Tsu01g01300 678 MobiDBLite consensus disorder prediction 657 678 - -
Tsu01g01300 678 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 543 663 - -
Tsu01g01300 678 SMART rrm1_1 549 625 IPR000504 GO:0003723
Tsu01g01300 678 SMART rrm1_1 170 241 IPR000504 GO:0003723
Tsu01g01300 678 SMART rrm1_1 452 513 IPR000504 GO:0003723
Tsu01g01300 678 SMART rrm1_1 298 369 IPR000504 GO:0003723
Tsu01g01300 678 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 73 383 - -
Tsu01g01300 678 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 401 523 - -
Tsu01g01300 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 453 511 IPR000504 GO:0003723
Tsu01g01300 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 364 IPR000504 GO:0003723
Tsu01g01300 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 239 IPR000504 GO:0003723
Tsu01g01300 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 558 620 IPR000504 GO:0003723
Tsu01g01300 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 517 IPR000504 GO:0003723
Tsu01g01300 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 373 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01300 Tsu-Chr1 12221054 12231793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01300 171 414 Eukaryotic Initiation Factors Gene Family AT4G34110 27.530 3.57e-18 86.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01300 01 12221054 12231793 Tsu01g01300 01 12221054 12231793 ECH