Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01108 ATGAGCAAATCCAACAATTTCTTTCATAATCTCATAAAACCCTTCAAATTTGGTTCAACCAGAGAGGGAAATAGTGAAGAAGATTTACAGAACATAGCTACACAAGAGCAGAGGACATTTTCCTATGAAACATTGGTTGCTGCTACCAACAACTTTAATGTTCATAGCAAGCTTGGTGAGGGAGGTTTTGGACCTGTTTTCAAGGGTAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACTTGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGCTGACACGCGTGCAGCACCGTAATGTGGTGAATTTGTATGGTTATTGCATCCATGGCAGAGAGAAGCTTCTTGTGTATGAGTATATCCCTCGTGAGAGCCTTGACAAGTTTCTATTCAGATCAAACAAGAAACATGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGATTACTTTATCTTCATGAAGACTCTCACATCTGCATAATTCATCGTGACATAAAAGCAGCCAACATTTTACTCGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGATTGGCCCGTCTCTTCCCGGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACACGGATACATGGCTCCGGAGTACTTGATGCATGGACATCTATCTGTGAAGGCAGATGTGTACAGCTATGGAGTTTTGGTGTTGGAGTTGATCACCGGTCATCGAAACTCCTCCTCTGATTCAGCCTTTAACGGAGACAATCTCCTTAATTGGGCATACAAGCTATACAAGAAAGGAAAGTGGGTAGAAATGGTGGACCCAACAGTAGTATCTTCGGTAACGGTAACAGAACAACTGGAGACGTGCATTCGAGTGAGTCTGTTATGCATGCAAGGCGATCCACAGCTTCGTCCAACAATGGGGCGTGTGGTGTTGATGTTGTCAAAGAAACCACCAAGTCACATGGAAGAACCAACGAGACCAGGTGTGCCCGGTTCCAGATACAAAAGAAGATTGCCTCGTAGTCGTACACCTTTCACTACTGATGACGAGAATGACTCATCTGCTTCACACGTTGATTCAAGCAACTGTAACACTACTACTACCACAAATTCCAATTCGTCTGCTACAAGAACAAGCTCTGCTACTGCACAAGTAGACACGAAAGGTAAACGTCCAATGCTACATTGA 1218 0.4327 MSKSNNFFHNLIKPFKFGSTREGNSEEDLQNIATQEQRTFSYETLVAATNNFNVHSKLGEGGFGPVFKGKLNDGREIAVKKLSLGSNQGKTQFVAEAKLLTRVQHRNVVNLYGYCIHGREKLLVYEYIPRESLDKFLFRSNKKHELDWKRRFDIINGVARGLLYLHEDSHICIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDSAFNGDNLLNWAYKLYKKGKWVEMVDPTVVSSVTVTEQLETCIRVSLLCMQGDPQLRPTMGRVVLMLSKKPPSHMEEPTRPGVPGSRYKRRLPRSRTPFTTDDENDSSASHVDSSNCNTTTTTNSNSSATRTSSATAQVDTKGKRPMLH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01108 405 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01108 405 SUPERFAMILY Protein kinase-like (PK-like) 36 342 IPR011009 -
Tsu01g01108 405 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Tsu01g01108 405 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01108 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Tsu01g01108 405 MobiDBLite consensus disorder prediction 351 365 - -
Tsu01g01108 405 Pfam Protein tyrosine and serine/threonine kinase 54 320 IPR001245 GO:0004672|GO:0006468
Tsu01g01108 405 PIRSF TyrPK_CSF1-R 50 148 - -
Tsu01g01108 405 PIRSF TyrPK_CSF1-R 129 396 - -
Tsu01g01108 405 CDD STKc_IRAK 58 325 - -
Tsu01g01108 405 PANTHER RECEPTOR-LIKE KINASE 3 379 - -
Tsu01g01108 405 MobiDBLite consensus disorder prediction 324 405 - -
Tsu01g01108 405 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 379 - -
Tsu01g01108 405 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Tsu01g01108 405 MobiDBLite consensus disorder prediction 366 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01108 Tsu-Chr1 10178061 10182803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01108 32 338 Receptor kinase-like Gene Family AT4G11530 50.321 1.12e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g01108 PK_Tyr_Ser-Thr 3.5e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01108 01 10178061 10182803 Tsu01g01108 01 10178061 10182803 ECH